lagan-2.0-41.fc40 RPM for x86_64

From Fedora Rawhide for x86_64 / l

LAGAN toolkit is a set of tools for local, global, and multiple alignment of
DNA sequences.  Please visit http://lagan.stanford.edu for publications
describing LAGAN and its components.

The 4 main parts of LAGAN are:

1. CHAOS local alignment tool
2. LAGAN pairwise global alignment tool
3. MLAGAN multiple global alignment tool.
4. Shuffle-LAGAN pairwise global alignment

Provides

• lagan
• lagan(x86-64)

Requires

• /usr/bin/perl
• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.14)(64bit)
• libc.so.6(GLIBC_2.2.5)(64bit)
• libc.so.6(GLIBC_2.3)(64bit)
• libc.so.6(GLIBC_2.3.4)(64bit)
• libc.so.6(GLIBC_2.34)(64bit)
• libc.so.6(GLIBC_2.38)(64bit)
• libc.so.6(GLIBC_2.4)(64bit)
• libc.so.6(GLIBC_2.7)(64bit)
• libgcc_s.so.1()(64bit)
• libgcc_s.so.1(GCC_3.0)(64bit)
• libgcc_s.so.1(GCC_3.3.1)(64bit)
• libm.so.6()(64bit)
• libm.so.6(GLIBC_2.29)(64bit)
• libstdc++.so.6()(64bit)
• libstdc++.so.6(CXXABI_1.3)(64bit)
• libstdc++.so.6(CXXABI_1.3.9)(64bit)
• libstdc++.so.6(GLIBCXX_3.4)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.15)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.20)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.21)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.29)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.30)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.32)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
• perl(:VERSION) >= 5.5.0
• perl(Cwd)
• perl(File::Basename)
• perl(File::Copy)
• perl(File::Path)
• perl(Getopt::Long)
• perl(IO::Handle)
• perl(IPC::Open2)
• perl(constant)
• perl(strict)
• perl(warnings)
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsZstd) <= 5.4.18-1
• rtld(GNU_HASH)

License

GPLv2

Changelog

* Thu Jan 25 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.0-41
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Sun Jan 21 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.0-40
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Thu Jul 20 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.0-39
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Thu Jan 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.0-38
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Fri Jan 13 2023 Florian Weimer <fweimer@redhat.com> - 2.0-37
  - C99 compatibility fixes (#2160661)
* Thu Jul 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.0-36
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild

Files

/usr/bin/chaos
/usr/bin/lagan
/usr/bin/mlagan
/usr/bin/prolagan
/usr/bin/slagan
/usr/lib/.build-id
/usr/lib/.build-id/16
/usr/lib/.build-id/16/d12cd0a94b5060507d3c2095bd47750031bd89
/usr/lib/.build-id/24
/usr/lib/.build-id/24/512707c8b267e475588d54654384f2c2b1673e
/usr/lib/.build-id/25
/usr/lib/.build-id/25/8537b0e0ad1b8c860f3fb7cbbc9bad428a9bf8
/usr/lib/.build-id/2b
/usr/lib/.build-id/2b/123aff450c15bbcf9b197cd4dc9efcef279ef9
/usr/lib/.build-id/5f
/usr/lib/.build-id/5f/15178a1d5643961904309bbe41960e22bd27bd
/usr/lib/.build-id/67
/usr/lib/.build-id/67/e53b7cb0b195325328c3312a9049e0ffa6362f
/usr/lib/.build-id/68
/usr/lib/.build-id/68/371075f24cd51c0ce14f892764fc4ab58435d5
/usr/lib/.build-id/6c
/usr/lib/.build-id/6c/e89cbe5d39a513b0fb1241a547fd67f7b0aa92
/usr/lib/.build-id/76
/usr/lib/.build-id/76/829a4c96eda802a8dab8627af116c5bbb25aa2
/usr/lib/.build-id/77
/usr/lib/.build-id/77/e074d57d3d23267dddbd91f7c32fe4b19af207
/usr/lib/.build-id/7d
/usr/lib/.build-id/7d/5968881953b18cdbc061de599869ceb601a96d
/usr/lib/.build-id/86
/usr/lib/.build-id/86/c7220f35310136aeddc3a0ee3c819029ca0b8a
/usr/lib/.build-id/8a
/usr/lib/.build-id/8a/7ebb6f62dd7a0b678b1912683afc80802a1a76
/usr/lib/.build-id/8d
/usr/lib/.build-id/8d/aaad10d2442f875d4ca69379570706af107ace
/usr/lib/.build-id/a3
/usr/lib/.build-id/a3/32fe94bf55e3879b79ac59950742c1a3cca233
/usr/lib/.build-id/b8
/usr/lib/.build-id/b8/fa11500f5009d3902ceecb621a11ddaf3d21d8
/usr/lib/.build-id/ba
/usr/lib/.build-id/ba/3992a1d7ce077deb03569b3f35fee1cb1b5d95
/usr/lib/.build-id/bb
/usr/lib/.build-id/bb/0fab9c0065f486daa8e2265d1d199b640e342b
/usr/lib/.build-id/db
/usr/lib/.build-id/db/a0bec29f54407bb84bfb5c80c9fb1f9cb36c9d
/usr/lib/.build-id/dd
/usr/lib/.build-id/dd/a09193b29eb6efc9fe67dc691b77c016c6a418
/usr/lib/.build-id/e0
/usr/lib/.build-id/e0/ea4664d1f060723c3f189ff069642c697d9f32
/usr/lib/.build-id/f3
/usr/lib/.build-id/f3/7934335bd0bd11f39246d91de447b65265dcff
/usr/lib/.build-id/f9
/usr/lib/.build-id/f9/762e722b3f0ae7ec063264f6ca7b7ba3c841b9
/usr/lib64/lagan
/usr/lib64/lagan/anal_gloc.pl
/usr/lib64/lagan/anchors
/usr/lib64/lagan/blosum62.txt
/usr/lib64/lagan/blosum62s.txt
/usr/lib64/lagan/glocal
/usr/lib64/lagan/nucmatrix.txt
/usr/lib64/lagan/order
/usr/lib64/lagan/rechaos.pl
/usr/lib64/lagan/supermap.pl
/usr/lib64/lagan/test.score
/usr/lib64/lagan/utils
/usr/lib64/lagan/utils/Glue
/usr/lib64/lagan/utils/bin2bl
/usr/lib64/lagan/utils/bin2mf
/usr/lib64/lagan/utils/cextract
/usr/lib64/lagan/utils/cmerge2.pl
/usr/lib64/lagan/utils/contigorder
/usr/lib64/lagan/utils/cstat
/usr/lib64/lagan/utils/dotplot
/usr/lib64/lagan/utils/draft.pl
/usr/lib64/lagan/utils/fa2xfa
/usr/lib64/lagan/utils/getbounds
/usr/lib64/lagan/utils/getcontigpos
/usr/lib64/lagan/utils/getlength
/usr/lib64/lagan/utils/getoverlap
/usr/lib64/lagan/utils/mextract.pl
/usr/lib64/lagan/utils/mf2bin.pl
/usr/lib64/lagan/utils/mpretty.pl
/usr/lib64/lagan/utils/mproject.pl
/usr/lib64/lagan/utils/mrun.pl
/usr/lib64/lagan/utils/mrunfile.pl
/usr/lib64/lagan/utils/mrunpairs.pl
/usr/lib64/lagan/utils/mviz.pl
/usr/lib64/lagan/utils/overlay
/usr/lib64/lagan/utils/rc
/usr/lib64/lagan/utils/scorealign
/usr/lib64/lagan/utils/scorecontigs
/usr/lib64/lagan/utils/seqmerge
/usr/lib64/lagan/xmfa2mfa.pl
/usr/share/doc/lagan
/usr/share/doc/lagan/LICENSE
/usr/share/doc/lagan/README.FIRST
/usr/share/doc/lagan/README.chaos
/usr/share/doc/lagan/README.lagan
/usr/share/doc/lagan/README.mlagan
/usr/share/doc/lagan/README.shuffle
/usr/share/doc/lagan/README.tools
/usr/share/doc/lagan/sample.fasta
/usr/share/doc/lagan/sample.params

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Fabrice Bellet, Thu May 2 23:41:02 2024