samtools-1.13-2.fc36 RPM for s390x

From Fedora 37 for s390x / s

SAM (Sequence Alignment/Map) is a flexible generic format for storing
nucleotide sequence alignment.
SAM Tools provide various utilities for manipulating alignments in the
SAM format, including sorting, merging, indexing and generating
alignments in a per-position format.

Provides

• samtools
• samtools(s390-64)

Requires

• /usr/bin/perl
• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.2)(64bit)
• libc.so.6(GLIBC_2.3)(64bit)
• libc.so.6(GLIBC_2.3.4)(64bit)
• libc.so.6(GLIBC_2.33)(64bit)
• libc.so.6(GLIBC_2.34)(64bit)
• libc.so.6(GLIBC_2.4)(64bit)
• libc.so.6(GLIBC_2.7)(64bit)
• libhts.so.3()(64bit)
• libm.so.6()(64bit)
• libm.so.6(GLIBC_2.2)(64bit)
• libm.so.6(GLIBC_2.29)(64bit)
• libncursesw.so.6()(64bit)
• libtinfo.so.6()(64bit)
• libz.so.1()(64bit)
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsZstd) <= 5.4.18-1
• rtld(GNU_HASH)

License

MIT

Changelog

* Sat Jan 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.13-2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Fri Jul 23 2021 John Marshall <jmarshall@hey.com> - 1.13-1
  - Update to samtools version 1.13
  - Upstream now includes individual man pages for each samtools subcommand
  - misc/varfilter.py has been removed upstream, and other scripts added
* Fri Jul 23 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.9-6
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
* Wed Jan 27 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.9-5
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
* Wed Jul 29 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.9-4
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
* Tue Mar 17 2020 Jun Aruga <jaruga@redhat.com> - 1.9-3
  - Fix the build failure adding perl(FindBin) and perl(lib) build dependencies.
* Thu Jan 30 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.9-2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild

Files

/usr/bin/ace2sam
/usr/bin/blast2sam.pl
/usr/bin/bowtie2sam.pl
/usr/bin/export2sam.pl
/usr/bin/fasta-sanitize.pl
/usr/bin/interpolate_sam.pl
/usr/bin/maq2sam-long
/usr/bin/maq2sam-short
/usr/bin/md5fa
/usr/bin/md5sum-lite
/usr/bin/novo2sam.pl
/usr/bin/plot-ampliconstats
/usr/bin/plot-bamstats
/usr/bin/psl2sam.pl
/usr/bin/sam2vcf.pl
/usr/bin/samtools
/usr/bin/samtools.pl
/usr/bin/seq_cache_populate.pl
/usr/bin/soap2sam.pl
/usr/bin/wgsim
/usr/bin/wgsim_eval.pl
/usr/bin/zoom2sam.pl
/usr/lib/.build-id
/usr/lib/.build-id/0e
/usr/lib/.build-id/0e/e89f0fd3fee25523755c465a8d9957ed0fae31
/usr/lib/.build-id/15
/usr/lib/.build-id/15/ae893e0533e240110d42540731bae86dd27c14
/usr/lib/.build-id/1f
/usr/lib/.build-id/1f/11bd4884916c4c544c5a04810f854a0433eaf0
/usr/lib/.build-id/35
/usr/lib/.build-id/35/0829b773748529f9133012eed5a05d7f2b5cbd
/usr/lib/.build-id/7d
/usr/lib/.build-id/7d/2ee3ef41e2b5be117e22a91e25d4f6a9a27c38
/usr/lib/.build-id/a3
/usr/lib/.build-id/a3/596616ff4f51d1c212a9825df33ee83059dc09
/usr/lib/.build-id/d9
/usr/lib/.build-id/d9/f1cc560c89cab11e32553296f781c4e152dec7
/usr/share/doc/samtools
/usr/share/doc/samtools/AUTHORS
/usr/share/doc/samtools/ChangeLog.old
/usr/share/doc/samtools/NEWS
/usr/share/doc/samtools/examples
/usr/share/doc/samtools/examples/00README.txt
/usr/share/doc/samtools/examples/ex1.fa
/usr/share/doc/samtools/examples/ex1.sam.gz
/usr/share/doc/samtools/examples/toy.fa
/usr/share/doc/samtools/examples/toy.sam
/usr/share/licenses/samtools
/usr/share/licenses/samtools/LICENSE
/usr/share/man/man1/samtools-addreplacerg.1.gz
/usr/share/man/man1/samtools-ampliconclip.1.gz
/usr/share/man/man1/samtools-ampliconstats.1.gz
/usr/share/man/man1/samtools-bedcov.1.gz
/usr/share/man/man1/samtools-calmd.1.gz
/usr/share/man/man1/samtools-cat.1.gz
/usr/share/man/man1/samtools-collate.1.gz
/usr/share/man/man1/samtools-coverage.1.gz
/usr/share/man/man1/samtools-depad.1.gz
/usr/share/man/man1/samtools-depth.1.gz
/usr/share/man/man1/samtools-dict.1.gz
/usr/share/man/man1/samtools-faidx.1.gz
/usr/share/man/man1/samtools-fasta.1.gz
/usr/share/man/man1/samtools-fastq.1.gz
/usr/share/man/man1/samtools-fixmate.1.gz
/usr/share/man/man1/samtools-flags.1.gz
/usr/share/man/man1/samtools-flagstat.1.gz
/usr/share/man/man1/samtools-fqidx.1.gz
/usr/share/man/man1/samtools-idxstats.1.gz
/usr/share/man/man1/samtools-import.1.gz
/usr/share/man/man1/samtools-index.1.gz
/usr/share/man/man1/samtools-markdup.1.gz
/usr/share/man/man1/samtools-merge.1.gz
/usr/share/man/man1/samtools-mpileup.1.gz
/usr/share/man/man1/samtools-phase.1.gz
/usr/share/man/man1/samtools-quickcheck.1.gz
/usr/share/man/man1/samtools-reheader.1.gz
/usr/share/man/man1/samtools-rmdup.1.gz
/usr/share/man/man1/samtools-sort.1.gz
/usr/share/man/man1/samtools-split.1.gz
/usr/share/man/man1/samtools-stats.1.gz
/usr/share/man/man1/samtools-targetcut.1.gz
/usr/share/man/man1/samtools-tview.1.gz
/usr/share/man/man1/samtools-view.1.gz
/usr/share/man/man1/samtools.1.gz
/usr/share/man/man1/wgsim.1.gz

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Fabrice Bellet, Tue Apr 9 21:25:34 2024