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| Name: python311-photutils | Distribution: openSUSE:Factory:zSystems |
| Version: 1.10.0 | Vendor: openSUSE |
| Release: 1.1 | Build date: Fri Nov 24 23:58:07 2023 |
| Group: Productivity/Scientific/Astronomy | Build host: s390zl22 |
| Size: 5466378 | Source RPM: python-photutils-1.10.0-1.1.src.rpm |
| Packager: https://bugs.opensuse.org | |
| Url: https://github.com/astropy/photutils | |
| Summary: An Astropy package for photometry | |
Photutils is an affiliated package of Astropy to provide tools for detecting and performing photometry of astronomical sources.
BSD-3-Clause
* Fri Nov 24 2023 Ben Greiner <code@bnavigator.de>
- Update to 1.10.0
[#]# General
* The minimum required Astropy is now 5.1. [#1627]
[#]# New Features
[#]## photutils.datasets
* Added a border_size keyword to make_test_psf_data. [#1665]
* Improved the generation of random PSF positions in
make_test_psf_data. [#1665]
[#]## photutils.detection
* Added a min_separation keyword to DAOStarFinder and
IRAFStarFinder. [#1663]
[#]## photutils.morphology
* Added a wcs keyword to data_properties. [#1648]
[#]## photutils.psf
* The GriddedPSFModel plot_grid method now returns a
matplotlib.figure.Figure object. [#1653]
* Added the ability for the GriddedPSFModel read method to read
FITS files generated by WebbPSF. [#1654]
* Added “flux_0” and “flux0” as allowed flux column names in the
init_params table input to the PSF photometry objects. [#1656]
* PSF models output from prepare_psf_model can now be input into
the PSF photometry classes. [#1657]
* Added make_psf_model function for making a PSF model from a 2D
Astropy model. Compound models are also supported. [#1658]
* The GriddedPSFModel oversampling can now be different in the x
and y directions. The oversampling attribute is now stored as a
1D numpy.ndarray with two elements. [#1664]
[#]## photutils.segmentation
* The SegmentationImage make_source_mask method now uses a much
faster implementation of binary dilation. [#1638]
* Added a scale keyword to the SegmentationImage.to_patches()
method to scale the sizes of the polygon patches. [#1641,
[#1646]]
* Improved the SegmentationImage imshow method to ensure that
labels are plotted with unique colors. [#1649]
* Added a imshow_map method to SegmentationImage for plotting
segmentation images with a small number of non-consecutive
labels. [#1649]
* Added a reset_cmap method to SegmentationImage for resetting
the colormap to a new random colormap. [#1649]
[#]## photutils.utils
* Improved the generation of random aperture positions in
ImageDepth. [#1666]
[#]# Bug Fixes
[#]## photutils.aperture
* Fixed an issue where the aperture plot method **kwargs were not
reset to the default values when called multiple times. [#1655]
[#]## photutils.psf
* Fixed a bug where SourceGrouper would fail if only one source
was input. [#1617]
* Fixed a bug in GriddedPSFModel plot_grid where the grid could
be plotted incorrectly if the input xygrid was not sorted in y
then x order. [#1661]
[#]## photutils.segmentation
* Fixed an issue where deblend_sources and SourceFinder would
raise an error if the contrast keyword was set to 1 (meaning no
deblending). [#1636]
* Fixed an issue where the vertices of the SegmentationImage
polygons were shifted by 0.5 pixels in both x and y. [#1646]
* API Changes
* The metadata in output tables now contains a timestamp. [#1640]
* Package versions in table metadata are now stored in the
“versions” key. [#1640]
* The order of the metadata in a table is now preserved when
writing to a file. [#1640]
[#]## photutils.psf
* Deprecated the prepare_psf_model function. Use the new
make_psf_model function instead. [#1658]
* The GriddedPSFModel now stores the ePSF grid such that it is
first sorted by y then by x. As a result, the order of the data
and xygrid attributes may be different. [#1661]
* The oversampling attribute is now stored as a 1D numpy.ndarray
with two elements. [#1664]
* A ValueError is raised if GriddedPSFModel is called with x and
y arrays that have more than 2 dimensions. [#1662]
[#]## photutils.segmentation
* Removed the deprecated kernel keyword from SourceCatalog.
[#1613]
* Fri Aug 25 2023 Ben Greiner <code@bnavigator.de>
- Update to 1.9.0
[#]# General
* The minimum required Python is now 3.9. [#1569]
* The minimum required NumPy is now 1.22. [#1572]
[#]# New Features
[#]## photutils.background
* Added LocalBackground class for computing local backgrounds in
a circular annulus aperture. [#1556]
[#]## photutils.datasets
* Added new make_test_psf_data function. [#1558, #1582, #1585]
[#]## photutils.psf
* Propagate measurement uncertainties in PSF fitting. [#1543]
* Added new PSFPhotometry and IterativePSFPhotometry classes for
performing PSF-fitting photometry. [#1558, #1559, #1563, #1566,
[#1567], #1581, #1586, #1590, #1594, #1603, #1604]
* Added a new SourceGrouper class. [#1558, #1605]
* Added a GriddedPSFModel fill_value attribute. [#1583]
* Added a grid_from_epsfs function to make a GriddedPSFModel from
ePSFs. [#1596]
* Added a read method to GriddedPSFModel for reading “STDPSF”
FITS files containing grids of ePSF models. [#1557]
* Added a plot_grid method to GriddedPSFModel for plotting ePSF
grids. [#1557]
* Added a STDPSFGrid class for reading “STDPSF” FITS files
containing grids of ePSF models and plotting the ePSF grids.
[#1557]
[#]# Bug Fixes
[#]## photutils.aperture
* Fixed a bug in the validation of PixelAperture positions.
[#1553]
[#]# API Changes
[#]## photutils.psf
* Deprecated the PSF photometry classes BasicPSFPhotometry,
IterativelySubtractedPSFPhotometry, and DAOPhotPSFPhotometry.
Use the new PSFPhotometry or IterativePSFPhotometry class
instead. [#1578]
* Deprecated the DAOGroup, DBSCANGroup, and GroupStarsBase
classes. Use the new SourceGrouper class instead. [#1578]
* Deprecated the get_grouped_psf_model and subtract_psf function.
[#1578]
* Thu May 18 2023 Ben Greiner <code@bnavigator.de>
- Update to 1.8.0
[#]# New Features
[#]## photutils.profiles
* The RadialProfile and CurveOfGrowth radial bins can now be
directly input, which also allows for non-uniform radial
spacing. [#1540]
[#]# Bug Fixes
[#]## photutils.psf
* Fixed an issue with the local model cache in GriddedPSFModel,
significantly improving performance. [#1536]
[#]# API Changes
* Removed the deprecated axes keyword in favor of ax for
consistency with other packages. [#1523]
[#]# photutils.aperture
* Removed the ApertureStats unpack_nddata method. [#1537]
[#]# photutils.profiles
* The API for defining the radial bins for the RadialProfile and
CurveOfGrowth classes was changed. While the new API allows for
more flexibility, unfortunately, it is not
backwards-compatible. [#1540]
[#]# photutils.segmentation
* Removed the deprecated kernel keyword from detect_sources and
deblend_sources. [#1524]
* Deprecated the kernel keyword in SourceCatalog. [#1525]
* Removed the deprecated outline_segments method from
SegmentationImage. [#1526]
* The SourceCatalog kron_params attribute is no longer returned
as a ndarray. It is returned as a tuple. [#1531]
* Wed Apr 26 2023 Ben Greiner <code@bnavigator.de>
- Update to 1.7.0
[#]# General
* The rasterio and shapely packages are now optional
dependencies. [#1509]
[#]# New Features
[#]## photutils.aperture
* Significantly improved the performance of aperture_photometry
and the PixelAperture do_photometry method for large arrays.
[#1485]
* Significantly improved the performance of the PixelAperture
area_overlap method, especially for large arrays. [#1490]
[#]## photutils.profiles
* Added a new profiles subpackage containing RadialProfile and
CurveOfGrowth classes. [#1494, #1496, #1498, #1499]
[#]## photutils.psf
* Significantly improved the performance of evaluating and
fitting GriddedPSFModel instances. [#1503]
[#]## photutils.segmentation
* Added a size keyword to the SegmentationImage make_source_mask
method. [#1506]
* Significantly improved the performance of SegmentationImage
make_source_mask when using square footprints for source
dilation. [#1506]
* Added the polygons property and to_patches and plot_patches
methods to SegmentationImage. [#1509]
* Added polygon keyword to the Segment class. [#1509]
[#]# Bug Fixes
[#]## photutils.centroids
* Fixed an issue where centroid_quadratic would sometimes fail if
the input data contained NaNs. [#1495]
[#]## photutils.detection
* Fixed an issue with the starfinders (DAOStarFinder,
IRAFStarFinder, and StarFinder) where an exception was raised
if exclude_border=True and there were no detections. [#1512].
[#]## photutils.isophote
* Fixed a bug where the upper harmonics (a3, a4, b3, and b4) had
the incorrect sign. [#1501]
* Fixed a bug in the calculation of the upper harmonic errors
(a3_err, a4_err, b3_err, and b4_err). [#1501].
[#]## photutils.psf
* Fixed an issue where the PSF-photometry progress bar was not
shown. [#1517]
* Fixed an issue where all PSF uncertainties were excluded if the
last star group had no covariance matrix. [#1519]
[#]## photutils.utils
* Fixed a bug in the calculation of ImageCutout xyorigin when
using the 'partial' mode when the cutout extended beyond the
right or top edge. [#1508]
[#]# API Changes
[#]## photutils.aperture
* The ApertureStats local_bkg keyword can now be broadcast for
apertures with multiple positions. [#1504]
[#]## photutils.centroids
* The centroid_sources function will now raise an error if the
cutout mask contains all True values. [#1516]
[#]## photutils.datasets
* Removed the deprecated load_fermi_image function. [#1479]
[#]## photutils.psf
* Removed the deprecated sandbox classes DiscretePRF and
Reproject. [#1479]
[#]## photutils.segmentation
* Removed the deprecated make_source_mask function in favor of
the SegmentationImage.make_source_mask method. [#1479]
* The SegmentationImage imshow method now uses "nearest"
interpolation instead of "none" to avoid rendering issues with
some backends. [#1507]
* The repr() notebook output for the Segment class now includes a
SVG polygon representation of the segment if the rasterio and
shapely packages are installed. [#1509]
* Deprecated the SegmentationImage outline_segments method. Use
the plot_patches method instead. [#1509]
- Drop photutils-pr1484-no-setuptools.patch
* Thu Dec 22 2022 Ben Greiner <code@bnavigator.de>
- Update to 1.6.0
[#]# General
* Following NEP 29, the minimum required Numpy is now 1.20.
[#1442]
* The minimum required Matplotlib is now 3.3.0. [#1442]
* The minimum required scikit-image is now 0.18.0. [#1442]
* The minimum required scikit-learn is now 1.0. [#1442]
[#]# New Features
[#]## photutils.aperture
* The ApertureStats class now accepts astropy NDData objects as
input. [#1409]
* Improved the performance of aperture photometry by 10-25%
(depending on the number of aperture positions). [#1438]
[#]## photutils.psf
* Added a progress bar for fitting PSF photometry [#1426]
* Added a subshape keyword to the PSF-fitting classes to define
the shape over which the PSF is subtracted. [#1477]
[#]## photutils.segmentation
* Added the ability to slice SegmentationImage objects. [#1413]
* Added mode and fill_value keywords to SourceCatalog
make_cutouts method. [#1420]
* Added segment_area source property and wcs, localbkg_width,
apermask_method, and kron_params attributes to SourceCatalog.
[#1425]
* Added the ability to use Quantity arrays with detect_threshold,
detect_sources, deblend_sources, and SourceFinder. [#1436]
* The progress bar used when deblending sources now is prepended
with “Deblending”. [#1439]
* Added “windowed” centroids to SourceCatalog. [#1447, #1468]
* Added quadratic centroids to SourceCatalog. [#1467, #1469]
* Added a progress_bar option to SourceCatalog for displaying
progress bars when calculating some source properties. [#1471]
[#]## photutils.utils
* Added xyorigin attribute to CutoutImage. [#1419]
* Added ImageDepth class. [#1434]
[#]# Bug Fixes
[#]## photutils.aperture
* Fixed a bug in the PixelAperture area_overlap method so that
the returned value does not inherit the data units. [#1408]
* Fixed an issue in ApertureStats get_ids for the case when the
ID numbers are not sorted (due to slicing). [#1423]
[#]## photutils.datasets
* Fixed a bug in the various load functions where FITS files were
not closed. [#1455]
[#]## photutils.segmentation
* Fixed an issue in the SourceCatalog kron_photometry,
make_kron_apertures, and plot_kron_apertures methods where the
input minimum Kron and circular radii would not be applied.
Instead the instance-level minima would always be used. [#1421]
* Fixed an issue where the SourceCatalog plot_kron_apertures
method would raise an error for a scalar SourceCatalog. [#1421]
* Fixed an issue in SourceCatalog get_labels for the case when
the labels are not sorted (due to slicing). [#1423]
[#]# API Changes
* Deprecated axes keyword in favor of ax for consistency with
other packages. [#1432]
* Importing tools from all subpackages now requires including the
subpackage name.
[#]## photutils.aperture
* Inputting PixelAperture positions as an Astropy Quantity in
pixel units is no longer allowed. [#1398]
* Inputting SkyAperture shape parameters as an Astropy Quantity
in pixel units is no longer allowed. [#1398]
* Removed the deprecated BoundingBox as_patch method. [#1462]
[#]## photutils.centroids
* Removed the deprecated oversampling keyword in centroid_com.
[#1398]
[#]## photutils.datasets
* Deprecated the load_fermi_image function. [#1455]
[#]## photutils.psf
* Removed the deprecated flux_residual_sigclip keyword in
EPSFBuilder. Use sigma_clip instead. [#1398]
* PSF photometry classes will no longer emit a RuntimeWarning if
the fitted parameter variance is negative. [#1458]
[#]## photutils.segmentation
* Removed the deprecated sigclip_sigma and sigclip_iters keywords
in detect_threshold. Use the sigma_clip keyword instead.
[#1398]
* Removed the mask_value, sigclip_sigma, and sigclip_iters
keywords in detect_threshold. Use the mask or sigma_clip
keywords instead. [#1398]
* Removed the deprecated the filter_fwhm and filter_size keywords
in make_source_mask. Use the kernel keyword instead. [#1398]
* If detection_cat is input to SourceCatalog, then the detection
catalog source centroids and morphological/shape properties
will be returned instead of calculating them from the input
data. Also, if detection_cat is input, then the input wcs,
apermask_method, and kron_params keywords will be ignored.
[#1425]
- Add photutils-pr1484-no-setuptools.patch
gh#astropy/photutils#1484
* Mon Aug 01 2022 Ben Greiner <code@bnavigator.de>
- Update to 1.5.0
General
* Added tqdm as an optional dependency. [#1364]
New Features
* photutils.psf
- Added a mask keyword when calling the PSF-fitting classes.
[#1350, #1351]
- The EPSFBuilder progress bar will use tqdm if the optional
package is installed. [#1367]
* photutils.segmentation
- Added SourceFinder class, which is a convenience class
combining detect_sources and deblend_sources. [#1344]
- Added a sigma_clip keyword to detect_threshold. [#1354]
- Added a make_source_mask method to SegmentationImage. [#1355]
- Added a make_2dgaussian_kernel convenience function. [#1356]
- Allow SegmentationImage.make_cmap background_color to be in
any matplotlib color format. [#1361]
- Added an imshow convenience method to SegmentationImage.
[#1362]
- Improved performance of deblend_sources. [#1364]
- Added a progress_bar keyword to deblend_sources. [#1364]
- Added a 'sinh' mode to deblend_sources. [#1368]
- Improved the resetting of cached SegmentationImage properties
so that custom (non-cached) attributes can be kept. [#1368]
- Added a nproc keyword to enable multiprocessing in
deblend_sources and SourceFinder. [#1372]
- Added a make_cutouts method to SourceCatalog for making
custom-shaped cutout images. [#1376]
- Added the ability to set a minimum unscaled Kron radius in
SourceCatalog. [#1381]
* photutils.utils
- Added a circular_footprint convenience function. [#1355]
- Added a CutoutImage class. [#1376]
Bug Fixes
* photutils.psf
- Fixed a warning message in EPSFFitter. [#1382]
* photutils.segmentation
- Fixed an issue in generating watershed markers used for
source deblending. [#1383]
API Changes
* photutils.centroids
- Changed the axes order of oversampling keyword in
centroid_com when input as a tuple. [#1358]
- Deprecated the oversampling keyword in centroid_com. [#1377]
* photutils.psf
- Invalid data values (i.e., NaN or inf) are now automatically
masked when performing PSF fitting. [#1350]
- Deprecated the sandbox classes DiscretePRF and Reproject.
[#1357]
- Changed the axes order of oversampling keywords when input as
a tuple. [#1358]
- Removed the unused shift_val keyword in EPSFBuilder and
EPSFModel. [#1377]
- Renamed the flux_residual_sigclip keyword (now deprecated) to
sigma_clip in EPSFBuilder. [#1378]
- The EPSFBuilder progress bar now requires that the optional
tqdm package be installed. [#1379]
- The tools in the PSF package now require keyword-only
arguments. [#1386]
* photutils.segmentation
- Removed the deprecated circular_aperture method from
SourceCatalog. [#1329]
- The SourceCatalog plot_kron_apertures method now sets a
default kron_apers value. [#1346]
- deblend_sources no longer allows an array to be input as a
segmentation image. It must be a SegmentationImage object.
[#1347]
- SegmentationImage no longer allows array-like input. It must
be a numpy ndarray. [#1347]
- Deprecated the sigclip_sigma and sigclip_iters keywords in
detect_threshold. Use the sigma_clip keyword instead. [#1354]
- Deprecated the make_source_mask function in favor of the
SegmentationImage.make_source_mask method. [#1355]
- Deprecated the kernel keyword in detect_sources and
deblend_sources. Instead, if filtering is desired, input a
convolved image directly into the data parameter. [#1365]
- Sources with a data minimum of zero are now treated the same
as negative minima (i.e., the mode is changed to “linear”)
for the “exponential” deblending mode. [#1368]
- A single warning (as opposed to 1 per source) is now raised
about negative/zero minimum data values using the
‘exponential’ deblending mode. The affected labels is
available in a new “info” attribute. [#1368]
- If the mode in deblend_sources is “exponential” or “sinh” and
there are too many potential deblended sources within a given
source (watershed markers), a warning will be raised and the
mode will be changed to “linear”. [#1369]
- The SourceCatalog make_circular_apertures and
make_kron_apertures methods now return a single aperture
(instead of a list with one item) for a scalar SourceCatalog.
[#1376]
- The SourceCatalog kron_params keyword now has an optional
third item representing the minimum circular radius. [#1381]
- The SourceCatalog kron_radius is now set to the minimum Kron
radius (the second element of kron_params) if the data or
radially weighted data sum to zero. [#1381]
* photutils.utils
- The colormap returned from make_random_cmap now has colors in
RGBA format. [#1361]
* Mon Mar 28 2022 Ben Greiner <code@bnavigator.de>
- Update to 1.4.0
New Features
* photutils.aperture
* Added a copy method to Aperture objects. [#1304]
* Added the ability to compare Aperture objects for equality.
[#1304]
* The theta keyword for EllipticalAperture, EllipticalAnnulus,
RectangularAperture, and RectangularEllipse can now be an
Astropy Angle or Quantity in angular units. [#1308]
* Added an ApertureStats class for computing statistics of
unmasked pixels within an aperture. [#1309, #1314, #1315,
[#1318]]
* Added a dtype keyword to the ApertureMask to_image method.
[#1320]
* photutils.background
* Added an alpha keyword to the Background2D.plot_meshes
method. [#1286]
* Added a clip keyword to the BkgZoomInterpolator class.
[#1324]
* photutils.segmentation
* Added SegmentationImage cmap attribute containing a default
colormap. [#1319]
* Improved the performance of SegmentationImage and
SourceCatalog, especially for large data arrays. [#1320]
* Added a convolved_data keyword to SourceCatalog. This is
recommended instead of using the kernel keyword. [#1321]
Bug Fixes
* photutils.aperture
* Fixed a bug in aperture_photometry where an error was not
raised if the data and error arrays have different units.
[#1285].
* photutils.background
* Fixed a bug in Background2D where using the pad edge method
would result in incorrect image padding if only one of the
axes needed padding. [#1292]
* photutils.centroid
* Fixed a bug in centroid_sources where setting error, xpeak,
or ypeak to None would result in an error. [#1297]
* Fixed a bug in centroid_quadratic where inputting a mask
would alter the input data array. [#1317]
* photutils.segmentation
* Fixed a bug in SourceCatalog where a UFuncTypeError would be
raised if the input data had an integer dtype [#1312].
API Changes
* photutils.aperture
* A ValueError is now raised if non-positive sizes are input to
sky-based apertures. [#1295]
* The BoundingBox.plot() method now returns a
matplotlib.patches.Patch object. [#1305]
* Inputting PixelAperture positions as an Astropy Quantity in
pixel units is deprecated. [#1310]
* Inputting SkyAperture shape parameters as an Astropy Quantity
in pixel units is deprecated. [#1310]
* photutils.background
* Removed the deprecated background_mesh_ma and
background_rms_mesh_ma Background2D properties. [#1280]
* By default, BkgZoomInterpolator uses clip=True to prevent the
interpolation from producing values outside the given input
range. If backwards-compatiblity is needed with older
Photutils versions, set clip=False. [#1324]
* photutils.centroid
* Removed the deprecated centroid_epsf and gaussian1d_moments
functions. [#1280]
* Importing tools from the centroids subpackage now requires
including the subpackage name. [#1280]
* photutils.morphology
* Importing tools from the morphology subpackage now requires
including the subpackage name. [#1280]
* photutils.segmentation
* Removed the deprecated source_properties function and the
SourceProperties and LegacySourceCatalog classes. [#1280]
* Removed the deprecated the filter_kernel keyword in the
detect_sources, deblend_sources, and make_source_mask
functions. [#1280]
* A TypeError is raised if the input array to SegmentationImage
does not have integer type. [#1319]
* A SegmentationImage may contain an array of all zeros.
[#1319]
* Deprecated the mask_value keyword in detect_threshold. Use
the mask keyword instead. [#1322]
* Deprecated the filter_fwhm and filter_size keywords in
make_source_mask. Use the kernel keyword instead. [#1322]
* Fri Dec 24 2021 Ben Greiner <code@bnavigator.de>
- Update to 1.3.0
General
* The metadata in output tables now contains version information
for all dependencies. [#1274]
New Features
* photutils.centroid
* Extra keyword arguments can be input to centroid_sources that
are then passed on to the centroid_func if supported.
[#1276,#1278]
* photutils.segmentation
* Added copy method to SourceCatalog. [#1264]
* Added kron_photometry method to SourceCatalog. [#1264]
* Added add_extra_property, remove_extra_property,
remove_extra_properties, and rename_extra_property methods
and extra_properties attribute to SourceCatalog. [#1264,
[#1268]]
* Added name and overwrite keywords to SourceCatalog
circular_photometry and fluxfrac_radius methods. [#1264]
* SourceCatalog fluxfrac_radius was improved for cases where
the source flux doesn't monotonically increase with
increasing radius. [#1264]
* Added meta and properties attributes to SourceCatalog.
[#1268]
* The SourceCatalog output table (using to_table) meta
dictionary now includes a field for the date/time. [#1268]
* Added SourceCatalog make_kron_apertures method. [#1268]
* Added SourceCatalog plot_circular_apertures and
plot_kron_apertures methods. [#1268]
Bug fixes
* photutils.segmentation
* If detection_catalog is input to SourceCatalog then the
detection centroids are used to calculate the
circular_aperture, circular_photometry, and fluxfrac_radius.
[#1264]
* Units are applied to SourceCatalog circular_photometry output
if the input data has units. [#1264]
* SourceCatalog circular_photometry returns scalar values if
catalog is scalar. [#1264]
* SourceCatalog fluxfrac_radius returns a Quantity with pixel
units. [#1264]
* Fixed a bug where the SourceCatalog detection_catalog was not
indexed/sliced when SourceCatalog was indexed/sliced. [#1268]
* SourceCatalog circular_photometry now returns NaN for
completely-masked sources. [#1268]
* SourceCatalog kron_flux is always NaN for sources where
kron_radius is NaN. [#1268]
* SourceCatalog fluxfrac_radius now returns NaN if kron_flux is
zero. [#1268]
API changes
* photutils.centroids
* A ValueError is now raised in centroid_sources if the input
xpos or ypos is outside of the input data. [#1276]
* A ValueError is now raised in centroid_quadratic if the input
xpeak or ypeak is outside of the input data. [#1276]
* NaNs are now returned from centroid_sources where the
centroid failed. This is usually due to a box_size that is
too small when using a fitting-based centroid function.
[#1276]
* photutils.segmentation
* Renamed the SourceCatalog circular_aperture method to
make_circular_apertures. The old name is deprecated. [#1268]
* The SourceCatalog kron_params keyword must have a minimum
circular radius that is greater than zero. The default value
is now 1.0. [#1268]
* detect_sources now uses astropy.convolution.convolve, which
allows for masking pixels. [#1269]
* Sun Sep 26 2021 Ben Greiner <code@bnavigator.de>
- Update to 1.2.0
* The minimum required scipy version is 1.6.0 [#1239]
photutils.aperture
* Added a mask keyword to the area_overlap method. [#1241]
photutils.background
* Improved the performance of Background2D by up to 10-50% when
the optional bottleneck package is installed. [#1232]
* Added a masked keyword to the background classes
MeanBackground, MedianBackground, ModeEstimatorBackground,
MMMBackground, SExtractorBackground,
BiweightLocationBackground, StdBackgroundRMS,
MADStdBackgroundRMS, and BiweightScaleBackgroundRMS. [#1232]
* Enable all background classes to work with Quantity inputs.
[#1233]
* Added a markersize keyword to the Background2D method
plot_meshes. [#1234]
* Added __repr__ methods to all background classes. [#1236]
* Added a grid_mode keyword to BkgZoomInterpolator. [#1239]
photutils.detection
* Added a xycoords keyword to DAOStarFinder and IRAFStarFinder.
[#1248]
photutils.psf
* Enabled the reuse of an output table from BasicPSFPhotometry
and its subclasses as an initial guess for another photometry
run. [#1251]
* Added the ability to skip the group_maker step by inputing an
initial guess table with a group_id column. [#1251]
photutils.aperture
* Fixed a bug when converting between pixel and sky apertures
with a gwcs object. [#1221]
photutils.background
* Fixed an issue where Background2D could fail when using the
'pad' edge method. [#1227]
photutils.detection
* Fixed the DAOStarFinder import deprecation message. [#1195]
photutils.morphology
* Fixed an issue in data_properties where a scalar background
input would raise an error. [#1198]
photutils.psf
* Fixed an issue in prepare_psf_model when xname or yname was
None where the model offsets were applied in the wrong
direction, resulting in the initial photometry guesses not
being improved by the fit. [#1199]
photutils.segmentation
* Fixed an issue in SourceCatalog where the user-input mask was
ignored when apermask_method='correct' for Kron-related
calculations. [#1210]
* Fixed an issue in SourceCatalog where the segment array could
incorrectly have units. [#1220]
photutils.utils
* Fixed an issue in ShepardIDWInterpolator to allow its
initialization with scalar data values and coordinate arrays
having more than one dimension. [#1226]
API changes
photutils.aperture
* The ApertureMask.get_values() function now returns an empty
array if there is no overlap with the data. [#1212]
* Removed the deprecated BoundingBox.slices and PixelAperture.
bounding_boxes attributes. [#1215]
photutils.background
* Invalid data values (i.e., NaN or inf) are now automatically
masked in Background2D. [#1232]
* The background classes MeanBackground, MedianBackground,
ModeEstimatorBackground, MMMBackground, SExtractorBackground,
BiweightLocationBackground, StdBackgroundRMS,
MADStdBackgroundRMS, and BiweightScaleBackgroundRMS now return
by default a numpy.ndarray with np.nan values representing
masked pixels instead of a masked array. A masked array can be
returned by setting masked=True. [#1232]
* Deprecated the Background2D attributes background_mesh_ma and
background_rms_mesh_ma. They have been renamed to
background_mesh_masked and background_rms_mesh_masked. [#1232]
* By default, BkgZoomInterpolator now uses grid_mode=True. For
zooming 2D images, this keyword should be set to True, which
makes the interpolator’s behavior consistent with scipy.
ndimage.map_coordinates, skimage.transform.resize, and OpenCV
(cv2.resize). If backwards-compatiblity is needed with older
Photutils’ versions, set grid_mode=False. [#1239]
photutils.centroid
* Deprecated the gaussian1d_moments and centroid_epsf functions.
[#1240]
photutils.datasets
* Removed the deprecated random_state keyword in the
apply_poisson_noise, make_noise_image,
make_random_models_table, and make_random_gaussians_table
functions. [#1244]
* make_random_models_table and make_random_gaussians_table now
return an astropy QTable with version metadata. [#1247]
photutils.detection
* DAOStarFinder, IRAFStarFinder, and find_peaks now return an
astropy QTable with version metadata. [#1247]
* The StarFinder label column was renamed to id for consistency
with the other star finder classes. [#1254]
photutils.isophote
* The Isophote to_table method nows return an astropy QTable
with version metadata. [#1247]
photutils.psf
* BasicPSFPhotometry, IterativelySubtractedPSFPhotometry, and
DAOPhotPSFPhotometry now return an astropy QTable with version
metadata. [#1247]
photutils.segmentation
* Deprecated the filter_kernel keyword in the detect_sources,
deblend_sources, and make_source_mask functions. It has been
renamed to simply kernel for consistency with SourceCatalog.
[#1242]
* Removed the deprecated random_state keyword in the make_cmap
method. [#1244]
* The SourceCatalog to_table method nows return an astropy
QTable with version metadata. [#1247]
photutils.utils
* Removed the deprecated check_random_state function. [#1244]
* Removed the deprecated random_state keyword in the
make_random_cmap function. [#1244]
* Sat Mar 20 2021 Ben Greiner <code@bnavigator.de>
- Update ot Version 1.1.0
General
- ------
* The minimum required python version is 3.7. [#1120]
New Features
- -----------
photutils.aperture
* The PixelAperture.plot() method now returns a list of
matplotlib.patches.Patch objects. [#923]
* Added an area_overlap method for PixelAperture objects that
gives the overlapping area of the aperture on the data. [#874]
* Added a get_overlap_slices method and a center attribute to
BoundingBox. [#1157]
* Added a get_values method to ApertureMask that returns a 1D
array of mask-weighted values. [#1158, #1161]
* Added get_overlap_slices method to ApertureMask. [#1165]
photutils.background
* The Background2D class now accepts astropy NDData,
CCDData, and Quantity objects as data inputs. [#1140]
photutils.detection
* Added a StarFinder class to detect stars with a user-defined
kernel. [#1182]
photutils.isophote
* Added the ability to specify the output columns in the
IsophoteList to_table method. [#1117]
photutils.psf
* The EPSFStars class is now usable with multiprocessing.
[#1152]
* Slicing EPSFStars now returns an EPSFStars instance. [#1185]
photutils.segmentation
* Added a modified, significantly faster, SourceCatalog class.
[#1170, #1188, #1191]
* Added circular_aperture and circular_phometry methods to the
SourceCatalog class. [#1188]
* Added fwhm property to the SourceCatalog class. [#1191]
* Added fluxfrac_radius method to the SourceCatalog class.
[#1192]
* Added a bbox attribute to SegmentationImage. [#1187]
Bug Fixes
- --------
photutils.aperture
* Slicing a scalar Aperture object now raises an informative
error
message. [#1154]
* Fixed an issue where ApertureMask.multiply fill_value was
not applied to pixels outside of the aperture mask, but within the
aperture bounding box. [#1158]
* Fixed an issue where ApertureMask.cutout would raise an error
if fill_value was non-finite and the input array was integer
type. [#1158]
* Fixed an issue where RectangularAnnulus with a non-default
h_in would give an incorrect ApertureMask. [#1160]
photutils.isophote
* Fix computation of gradient relative error when gradient=0.
[#1180]
photutils.psf
* Fixed a bug in EPSFBuild where a warning was raised if the
input smoothing_kernel was an numpy.ndarray. [#1146]
* Fixed a bug that caused photometry to fail on an EPSFmodel
with multiple stars in a group. [#1135]
* Added a fallback aperture_radius for PSF models without a FWHM
or sigma attribute, raising a warning. [#740]
photutils.segmentation
* Fixed SourceProperties local_background to work with
Quantity data inputs. [#1162]
* Fixed SourceProperties local_background for sources near the
image edges. [#1162]
* Fixed SourceProperties kron_radius for sources that are
completely masked. [#1164]
* Fixed SourceProperties Kron properties for sources near the
image edges. [#1167]
* Fixed SourceProperties Kron mask correction. [#1167]
API changes
- ----------
photutils.aperture
* Deprecated the BoundingBox slices attribute. Use the
get_overlap_slices method instead. [#1157]
photutils.centroid
* Removed the deprecated fit_2dgaussian function and
GaussianConst2D class. [#1147]
* Importing tools from the centroids subpackge without
including the subpackage name is deprecated. [#1190]
photutils.morphology
* Importing tools from the morphology subpackge without
including the subpackage name is deprecated. [#1190]
photutils.segmentation
* Deprecated the "mask_all" option in the SourceProperties
kron_params keyword. [#1167]
* Deprecated source_properties, SourceProperties, and
LegacySourceCatalog. Use the new SourceCatalog function
instead. [#1170]
* The detect_threshold function was moved to the segmentation
subpackage. [#1171]
* Removed the ability to slice SegmentationImage. Instead slice
the segments attribute. [#1187]
* Wed Jan 20 2021 Benjamin Greiner <code@bnavigator.de>
- Update to Version 1.0.2
General
- -----
photutils.background
* Improved the performance of Background2D (e.g., by a
factor of ~4 with 2048x2048 input arrays when using the
default interpolator). [#1103, #1108]
Bug Fixes
- -------
photutils.background
* Fixed a bug with Background2D where using
BkgIDWInterpolator would give incorrect results.
[#1104]
photutils.isophote
* Corrected calculations of upper harmonics and their
errors [#1089]
* Fixed bug that caused an infinite loop when the sample
extracted from an image has zero length. [#1129]
* Fixed a bug where the default fixed_parameters in
EllipseSample.update() were not defined. [#1139]
photutils.psf
* Fixed a bug where very incorrect PSF-fitting
uncertainties could be returned when the astropy fitter
did not return fit uncertainties. [#1143]
photutils.segmentation
* Fixed an issue where negative Kron radius values could
be returned, which would cause an error when
calculating Kron fluxes. [#1132]
* Fixed an issue where an error was raised with
SegmentationImage.remove_border_labels() with
relabel=True when no segments remain. [#1133]
photutils.psf
* Changed the default recentering_func in EPSFBuilder, to
avoid convergence issues. [#1144]
- Drop photutils-ease-background2d-tests.patch fixed upstream
gh#astropy/photutils#1145
* Fri Jan 15 2021 Benjamin Greiner <code@bnavigator.de>
- Add photutils-ease-background2d-tests.patch -- ease precision
tolerance in background 2D tests gh#astropy/photutils#1145
* Fri Sep 25 2020 Benjamin Greiner <code@bnavigator.de>
- Update to Version 1.0.1
Bug Fixes
* photutils.psf
Fixed checks on oversampling factors. [#1086]
* Wed Sep 23 2020 Benjamin Greiner <code@bnavigator.de>
- Update to Version 1.0.0
General
* The minimum required python version is 3.6. [#952]
* The minimum required astropy version is 4.0. [#1081]
* The minimum required numpy version is 1.17. [#1079]
* Removed astropy-helpers and updated the package
infrastructure as described in Astropy APE 17. [#915]
New Features
* photutils.aperture
* Added b_in as an optional ellipse annulus keyword. [#1070]
* Added h_in as an optional rectangle annulus keyword.
[#1070]
* photutils.background
* Added coverage_mask and fill_value keyword options to
Background2D. [#1061]
* photutils.centroids
* Added quadratic centroid estimator function
(centroid_quadratic). [#1067]
* photutils.psf
* Added the ability to use odd oversampling factors in
EPSFBuilder. [#1076]
* photutils.segmentation
* Added Kron radius, flux, flux error, and aperture to
SourceProperties. [#1068]
* Added local background to SourceProperties. [#1075]
Bug Fixes
* photutils.isophote
* Fixed a typo in the calculation of the b4 higher-order
harmonic coefficient in build_ellipse_model. [#1052]
* Fixed a bug where build_ellipse_model falls into an
infinite loop when the pixel to fit is outside of the
image. [#1039]
* Fixed a bug where build_ellipse_model falls into an
infinite loop under certain image/parameters input
combinations. [#1056]
* photutils.psf
* Fixed a bug in subtract_psf caused by using a fill_value of
np.nan with an integer input array. [#1062]
* photutils.segmentation
* Fixed a bug where source_properties would fail with
unitless gwcs.wcs.WCS objects. [#1020]
* photutils.utils
* The effective_gain parameter in calc_total_error can now be
zero (or contain zero values). [#1019]
API changes
* photutils.aperture
* Aperture pixel positions can no longer be shaped as 2xN.
[#953]
* Removed the deprecated units keyword in aperture_photometry
and PixelAperture.do_photometry. [#953]
* PrimaryHDU, ImageHDU, and HDUList can no longer be input to
aperture_photometry. [#953]
* Removed the deprecated the Aperture mask_area method.
[#953]
* Removed the deprecated Aperture plot keywords ax and
indices. [#953]
* photutils.background
* Removed the deprecated ax keyword in
Background2D.plot_meshes. [#953]
* Background2D keyword options can not be input as positional
arguments. [#1061]
* photutils.centroids
* centroid_1dg, centroid_2dg, gaussian1d_moments,
fit_2dgaussian, and GaussianConst2D have been moved to a
new photutils.centroids.gaussian module. [#1064]
* Deprecated fit_2dgaussian and GaussianConst2D. [#1064]
* photutils.datasets
* Removed the deprecated type keyword in make_noise_image.
[#953]
* Renamed the random_state keyword (deprecated) to seed in
apply_poisson_noise, make_noise_image,
make_random_models_table, and make_random_gaussians_table
functions. [#1080]
* photutils.detection
* Removed the deprecated snr keyword in detect_threshold.
[#953]
* photutils.psf
* Added flux_residual_sigclip as an input parameter, allowing
for custom sigma clipping options in EPSFBuilder. [#984]
* Added extra_output_cols as a parameter to
BasicPSFPhotometry, IterativelySubtractedPSFPhotometry and
DAOPhotPSFPhotometry. [#745]
* photutils.segmentation
* Removed the deprecated SegmentationImage methods cmap and
relabel. [#953]
* Removed the deprecated SourceProperties values and coords
attributes. [#953]
* Removed the deprecated xmin/ymin and xmax/ymax properties.
[#953]
* Removed the deprecated snr and mask_value keywords in
make_source_mask. [#953]
* Renamed the random_state keyword (deprecated) to seed in
the make_cmap method. [#1080]
* photutils.utils
* Removed the deprecated random_cmap, mask_to_mirrored_num,
get_version_info, filter_data, and std_blocksum functions.
[#953]
* Removed the deprecated wcs_helpers functions
pixel_scale_angle_at_skycoord, assert_angle_or_pixel,
assert_angle, and pixel_to_icrs_coords. [#953]
* Deprecated the check_random_state function. [#1080]
* Renamed the random_state keyword (deprecated) to seed in
the make_random_cmap function. [#1080]
- Drop patches merged upstream
* 0001-aperture-mask-test-assert-almost-equal.patch
* photutils-pr1041-update-watershed-import.patch
* Fri Aug 14 2020 Benjamin Greiner <code@bnavigator.de>
- add photutils-pr1041-update-watershed-import.patch to fix failing
test gh#astropy/photutils#1041
* Fri Jul 17 2020 Benjamin Greiner <code@bnavigator.de>
- actually detect failures with sys.exit(photutils.test())
* Mon Jul 13 2020 Benjamin Greiner <code@bnavigator.de>
- fix failing tests: use astropy's test suite logic to call pytest
- add URL for 0001-aperture-mask-test-assert-almost-equal.patch
gh#astropy/photutils#1014
* Fri Jan 24 2020 Benjamin Greiner <code@bnavigator.de>
- 0001-aperture-mask-test-assert-almost-equal.patch:
upstream PR#1014 to avoid occasionally failing builds
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