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| Name: R-ape | Distribution: Fedora Project |
| Version: 5.6.2 | Vendor: Fedora Project |
| Release: 1.fc37 | Build date: Sun Sep 4 13:33:45 2022 |
| Group: Unspecified | Build host: buildvm-a64-23.iad2.fedoraproject.org |
| Size: 4657982 | Source RPM: R-ape-5.6.2-1.fc37.src.rpm |
| Packager: Fedora Project | |
| Url: https://CRAN.R-project.org/package=ape | |
| Summary: Analyses of Phylogenetics and Evolution | |
Functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
GPLv2 or GPLv3
* Fri Sep 02 2022 Tom Callaway <spot@fedoraproject.org> - 5.6.2-1 - update to 5.6-2 - rebuild for R 4.2.1 - bootstrap on * Wed Jul 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 5.5-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Wed Jan 19 2022 Fedora Release Engineering <releng@fedoraproject.org> - 5.5-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 5.5-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Thu Jun 17 2021 Tom Callaway <spot@fedoraproject.org> - 5.5-2 - bootstrap off, but rework check logic around missing phangorn * Tue Jun 15 2021 Tom Callaway <spot@fedoraproject.org> - 5.5-1 - update to 5.5 - bootstrap - Rebuilt for R 4.1.0 * Mon Jun 07 2021 Tom Callaway <spot@fedoraproject.org> - 5.4.1-3 - rebuild for R 4.1.0 * Mon Jan 25 2021 Fedora Release Engineering <releng@fedoraproject.org> - 5.4.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
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