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bfast-0.7.0a-32.fc39 RPM for s390x

From Fedora Rawhide for s390x / b

Name: bfast Distribution: Fedora Project
Version: 0.7.0a Vendor: Fedora Project
Release: 32.fc39 Build date: Wed Jul 19 17:06:11 2023
Group: Unspecified Build host: buildvm-s390x-09.s390.fedoraproject.org
Size: 1385111 Source RPM: bfast-0.7.0a-32.fc39.src.rpm
Packager: Fedora Project
Url: https://github.com/nh13/BFAST
Summary: Blat-like Fast Accurate Search Tool
 
BFAST facilitates the fast and accurate mapping of short reads to
reference sequences.  Some advantages of BFAST include:

Speed: enables billions of short reads to be mapped quickly.

Accuracy: A priori probabilities for mapping reads with defined set of variants.

An easy way to measurably tune accuracy at the expense of speed.

Specifically, BFAST was designed to facilitate whole-genome
resequencing, where mapping billions of short reads with variants is
of utmost importance.

BFAST supports both Illumina and ABI SOLiD data, as well as any other
Next-Generation Sequencing Technology (454, Helicos), with particular
emphasis on sensitivity towards errors, SNPs and especially
indels. Other algorithms take short-cuts by ignoring errors, certain
types of variants (indels), and even require further alignment, all to
be the "fastest" (but still not complete). BFAST is able to be tuned
to find variants regardless of the error-rate, polymorphism rate, or
other factors.

Provides

Requires

License

GPLv2 and MIT

Changelog

* Wed Jul 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-32
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Wed Jan 18 2023 Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-31
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Wed Jul 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-30
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Wed Jan 19 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-29
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-28
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild

Files

/usr/bin/balignmentscoredistribution
/usr/bin/balignsim
/usr/bin/bevalsim
/usr/bin/bfast
/usr/bin/bfast.resubmit.pl
/usr/bin/bfast.submit.pl
/usr/bin/bgeneratereads
/usr/bin/bindexdist
/usr/bin/bindexhist
/usr/bin/bmfmerge
/usr/bin/brepeat
/usr/bin/btestindexes
/usr/bin/ill2fastq.pl
/usr/bin/solid2fastq
/usr/lib/.build-id
/usr/lib/.build-id/09
/usr/lib/.build-id/09/b8965c9ee5482bf4fe22f1d5a77dc016951f39
/usr/lib/.build-id/0b
/usr/lib/.build-id/0b/26c9ab1351ad1c2d4401decad26f04d099cceb
/usr/lib/.build-id/0c
/usr/lib/.build-id/0c/15e1017df1ee8794347c99b128cc2977c25c19
/usr/lib/.build-id/12
/usr/lib/.build-id/12/9820c08523d6d31c29127e89b94990f433b35b
/usr/lib/.build-id/3a
/usr/lib/.build-id/3a/a604baf5e6ac28699735f14b8a7fb02254c040
/usr/lib/.build-id/4b
/usr/lib/.build-id/4b/b91c4cfe3088870abc3bf39ae4f23da43d328e
/usr/lib/.build-id/79
/usr/lib/.build-id/79/1d1321fdcb12b0150df4c050b8663b3d9e75f4
/usr/lib/.build-id/97
/usr/lib/.build-id/97/69b1e57b80232fac14be5919f284f891664000
/usr/lib/.build-id/b9
/usr/lib/.build-id/b9/869e80e57591b69fce60334379840e4f1b5dc6
/usr/lib/.build-id/bd
/usr/lib/.build-id/bd/b36963fbb4a03e2643d7befd541d6ac99511bd
/usr/lib/.build-id/cd
/usr/lib/.build-id/cd/04f4799f125e536d5161d4b445ec47751d48b3
/usr/share/doc/bfast
/usr/share/doc/bfast/AUTHORS
/usr/share/doc/bfast/ChangeLog
/usr/share/doc/bfast/NEWS
/usr/share/doc/bfast/README
/usr/share/doc/bfast/bfast-book.pdf
/usr/share/licenses/bfast
/usr/share/licenses/bfast/LICENSE

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Fabrice Bellet, Sun Apr 28 02:48:40 2024