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python3-openms-3.0.0-2.fc39 RPM for x86_64

From Fedora 39 for x86_64 / p

Name: python3-openms Distribution: Fedora Project
Version: 3.0.0 Vendor: Fedora Project
Release: 2.fc39 Build date: Mon Aug 14 22:15:45 2023
Group: Unspecified Build host: buildvm-x86-22.iad2.fedoraproject.org
Size: 52028570 Source RPM: openms-3.0.0-2.fc39.src.rpm
Packager: Fedora Project
Url: http://www.openms.de/
Summary: Python wrapper for OpenMS
 
This package contains Python3 bindings for a large part of the OpenMS library
for mass spectrometry based proteomics.  It thus provides providing facile
access to a feature-rich, open-source algorithm library
for mass-spectrometry based proteomics analysis.
These Python bindings allow raw access to the data-structures and algorithms
implemented in OpenMS, specifically those for file access
(mzXML, mzML, TraML, mzIdentML among others), basic signal processing
(smoothing, filtering, de-isotoping and peak-picking) and complex data analysis
(including label-free, SILAC, iTRAQ and SWATH analysis tools).

Provides

Requires

License

BSD

Changelog

* Mon Aug 14 2023 Antonio Trande <sagitter@fedoraproject.org> - 3.0.0-2
  - Unbundle Qt5QuickWidgets libraries (RHBZ#2231587)
* Mon Jul 24 2023 Antonio Trande <sagitter@fedoraproject.org> - 3.0.0-1
  - Release 3.0.0
  - Set _smp_ncpus_max equal to 2 for all architectures
  - Disable LTO flags
* Thu Jul 20 2023 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.0-0.2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Mon Jul 03 2023 Antonio Trande <sagitter@fedoraproject.org> - 3.0.0-0.1
  - Pre-release 3.0.0
* Wed Feb 01 2023 Antonio Trande <sagitter@fedoraproject.org> - 2.8.0-0.5
  - Fixed for GCC-13
* Thu Jan 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.8.0-0.4
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Thu Aug 18 2022 Jerry James <loganjerry@gmail.com> - 2.8.0-0.3
  - Rebuild for libsvm 3.3
* Fri Jul 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.8.0-0.2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Sat Mar 05 2022 Antonio Trande <sagitter@fedoraproject.org> - 2.8.0-0.1
  - Pre-release 2.8.0
  - Patched for GCC-12
  - ExclusiveArch qt5_qtwebengine_arches
* Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.7.0-3
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Sun Nov 28 2021 Antonio Trande <sagitter@fedoraproject.org> - 2.7.0-2
  - Rebuild for hdf5 1.12.1
  - Disable Python binding
* Sat Sep 18 2021 Antonio Trande <sagitter@fedoraproject.org> - 2.7.0-1
  - Release 2.7.0
  - Tests disabled
  - Use bundled seqan (optimized for OpenMS)

Files

/usr/lib/.build-id
/usr/lib/.build-id/2c/759139e3bb7f320b714fa12a08fcfcfca26c5a
/usr/lib/.build-id/6b
/usr/lib/.build-id/6b/e8f2ea71beda64ebc0a07648598418fee41b85
/usr/lib/.build-id/79
/usr/lib/.build-id/79/449df3f123b049506fa6255b1349ea6ec813dc
/usr/lib/.build-id/ed/0f9f1e4c29b9ebed5775fa6f9a296353e5e740
/usr/lib64/python3.12/site-packages/pyopenms
/usr/lib64/python3.12/site-packages/pyopenms-3.0.0-py3.12.egg-info
/usr/lib64/python3.12/site-packages/pyopenms-3.0.0-py3.12.egg-info/PKG-INFO
/usr/lib64/python3.12/site-packages/pyopenms-3.0.0-py3.12.egg-info/SOURCES.txt
/usr/lib64/python3.12/site-packages/pyopenms-3.0.0-py3.12.egg-info/dependency_links.txt
/usr/lib64/python3.12/site-packages/pyopenms-3.0.0-py3.12.egg-info/not-zip-safe
/usr/lib64/python3.12/site-packages/pyopenms-3.0.0-py3.12.egg-info/requires.txt
/usr/lib64/python3.12/site-packages/pyopenms-3.0.0-py3.12.egg-info/top_level.txt
/usr/lib64/python3.12/site-packages/pyopenms/Constants.py
/usr/lib64/python3.12/site-packages/pyopenms/License.txt
/usr/lib64/python3.12/site-packages/pyopenms/__init__.py
/usr/lib64/python3.12/site-packages/pyopenms/__init__.pyi
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/usr/lib64/python3.12/site-packages/pyopenms/_qt_version_info.py
/usr/lib64/python3.12/site-packages/pyopenms/_sysinfo.py
/usr/lib64/python3.12/site-packages/pyopenms/_version.py
/usr/lib64/python3.12/site-packages/pyopenms/libOpenMS.so
/usr/lib64/python3.12/site-packages/pyopenms/libOpenSwathAlgo.so
/usr/lib64/python3.12/site-packages/pyopenms/libSuperHirn.so
/usr/lib64/python3.12/site-packages/pyopenms/plotting.py
/usr/lib64/python3.12/site-packages/pyopenms/py.typed
/usr/lib64/python3.12/site-packages/pyopenms/share
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/Custom_RNA_modifications.tsv
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/Enzymes.xml
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/Enzymes_RNA.xml
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/HMDBMappingFile.tsv
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/MetaboliteIsoModel.scale
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/MetaboliteIsoModel.svm
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/MetaboliteIsoModelNoised2.scale
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/MetaboliteIsoModelNoised2.svm
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/MetaboliteIsoModelNoised5.scale
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/MetaboliteIsoModelNoised5.svm
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/MissedCleavage.model
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/Modomics.json
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/Modomics.tsv
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/NegativeAdducts.tsv
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/OMSSA_modification_mapping
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/PSI-MOD.obo
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/PositiveAdducts.tsv
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/XLMOD.obo
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/XTandem_default_config.xml
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/XTandem_residue_mass.bioml.xml
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CHEMISTRY/unimod.xml
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CV
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CV/brenda.obo
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CV/goslim_goa.obo
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CV/psi-ms.obo
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CV/psi-mzdata.obo
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CV/qc-cv-legacy.obo
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CV/qc-cv.obo
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CV/quality.obo
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CV/unimod.obo
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/CV/unit.obo
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/DESKTOP
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/DESKTOP/TOPPAS.appdata.xml
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/DESKTOP/TOPPAS.desktop
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/DESKTOP/TOPPView.appdata.xml
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/DESKTOP/TOPPView.desktop
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/DESKTOP/readme.txt
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/GUISTYLE
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/GUISTYLE/qtStyleSheet.qss
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/IDPool
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/IDPool/IDPool.txt
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/IDPool/README
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/MAPPING
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/MAPPING/TraML-mapping.xml
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/MAPPING/ms-mapping.xml
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/MAPPING/mzIdentML-mapping.xml
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/MAPPING/mzdata-mapping.xml
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/PIP
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/PIP/codebooks.data
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/PIP/linearMapping.data
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/CTD_0_3.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/ConsensusXML_1_0.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/ConsensusXML_1_1.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/ConsensusXML_1_2.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/ConsensusXML_1_3.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/ConsensusXML_1_4.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/ConsensusXML_1_5.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/ConsensusXML_1_6.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/ConsensusXML_1_7.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/CvMapping.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_0.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_1.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_2.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_3.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_4.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_5.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_6.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_7.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_8.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_9.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/FuGElightv1.0.0.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/IdXML_1_0.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/IdXML_1_1.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/IdXML_1_2.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/IdXML_1_3.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/IdXML_1_4.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/IdXML_1_5.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/Param_1_0.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/Param_1_1.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/Param_1_2.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/Param_1_3.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/Param_1_4.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/Param_1_6_2.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/Param_1_7_0.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/ToolDescriptor_1_0.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/TraML0.9.3.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/TraML1.0.0.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/TrafoXML_1_0.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/TrafoXML_1_1.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/general_types_1.0.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzData_1_05.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzIdentML1.0.0.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzIdentML1.1.0.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzML_1_00.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzML_1_10.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzML_idx_1_00.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzML_idx_1_10.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzQCML_0_0_5.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzQuantML_1_0_0-rc2.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzXML_2_1.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzXML_3.1.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzXML_3.1_mod.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzXML_idx_3.1.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/pepXML_v114.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/pepXML_v122.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/protXML_v6.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/qcML_0.0.7.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/separation_technique_1.0.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCHEMAS/xQuest_1_0.xsd
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCRIPTS
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCRIPTS/InternalCalibration_Models.R
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCRIPTS/InternalCalibration_Residuals.R
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCRIPTS/ProduceQCFigures_acc.R
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCRIPTS/ProduceQCFigures_idmap.R
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCRIPTS/ProduceQCFigures_inj.R
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCRIPTS/ProduceQCFigures_rt_acc.R
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCRIPTS/ProduceQCFigures_setid.R
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCRIPTS/ProduceQCFigures_tic.R
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCRIPTS/ProteomicsLFQ.R
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCRIPTS/Rscript_generic_example.R
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCRIPTS/mzTab2tsv_PEP.R
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCRIPTS/mzTab2tsv_PRT.R
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCRIPTS/mzTab2tsv_PSM.R
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCRIPTS/plot_trafo.R
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SCRIPTS/ropenms.R
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SIMULATION
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SIMULATION/DTPredict.model
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SIMULATION/DTPredict.model_additional_parameters
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SIMULATION/DTPredict.model_samples
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SIMULATION/FASTAProteinAbundanceSampling.py
/usr/lib64/python3.12/site-packages/pyopenms/share/OpenMS/SIMULATION/MSMSim.model
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Fabrice Bellet, Fri May 10 02:04:07 2024