lagan-2.0-39.fc39 RPM for x86_64

From Fedora 39 for x86_64 / l

LAGAN toolkit is a set of tools for local, global, and multiple alignment of
DNA sequences.  Please visit http://lagan.stanford.edu for publications
describing LAGAN and its components.

The 4 main parts of LAGAN are:

1. CHAOS local alignment tool
2. LAGAN pairwise global alignment tool
3. MLAGAN multiple global alignment tool.
4. Shuffle-LAGAN pairwise global alignment

Provides

• lagan
• lagan(x86-64)

Requires

• /usr/bin/perl
• glibc >= 2.37.9000-17
• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.14)(64bit)
• libc.so.6(GLIBC_2.2.5)(64bit)
• libc.so.6(GLIBC_2.3)(64bit)
• libc.so.6(GLIBC_2.3.4)(64bit)
• libc.so.6(GLIBC_2.34)(64bit)
• libc.so.6(GLIBC_2.38)(64bit)
• libc.so.6(GLIBC_2.4)(64bit)
• libc.so.6(GLIBC_2.7)(64bit)
• libgcc_s.so.1()(64bit)
• libgcc_s.so.1(GCC_3.0)(64bit)
• libgcc_s.so.1(GCC_3.3.1)(64bit)
• libm.so.6()(64bit)
• libm.so.6(GLIBC_2.29)(64bit)
• libstdc++.so.6()(64bit)
• libstdc++.so.6(CXXABI_1.3)(64bit)
• libstdc++.so.6(CXXABI_1.3.9)(64bit)
• libstdc++.so.6(GLIBCXX_3.4)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.15)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.20)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.21)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.29)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.30)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.32)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
• perl(:VERSION) >= 5.5.0
• perl(Cwd)
• perl(File::Basename)
• perl(File::Copy)
• perl(File::Path)
• perl(Getopt::Long)
• perl(IO::Handle)
• perl(IPC::Open2)
• perl(constant)
• perl(strict)
• perl(warnings)
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsZstd) <= 5.4.18-1
• rtld(GNU_HASH)

License

GPLv2

Changelog

* Thu Jul 20 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.0-39
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Thu Jan 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.0-38
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Fri Jan 13 2023 Florian Weimer <fweimer@redhat.com> - 2.0-37
  - C99 compatibility fixes (#2160661)
* Thu Jul 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.0-36
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.0-35
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Thu Jul 22 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2.0-34
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild

Files

/usr/bin/chaos
/usr/bin/lagan
/usr/bin/mlagan
/usr/bin/prolagan
/usr/bin/slagan
/usr/lib/.build-id
/usr/lib/.build-id/08
/usr/lib/.build-id/08/8243811ff97870cd92c203303656ea91078f05
/usr/lib/.build-id/0a
/usr/lib/.build-id/0a/73aa3ad8f11cd78b7a06348a267e8ccd77b136
/usr/lib/.build-id/1c
/usr/lib/.build-id/1c/7fe40a7d34b3687d330401d5188741ddd6124e
/usr/lib/.build-id/1d
/usr/lib/.build-id/1d/eda1ed3aae079ac7dcb5e9792a28fcfc221fe5
/usr/lib/.build-id/2b
/usr/lib/.build-id/2b/236113e676948a19ffa94d3e43dd22b96017d7
/usr/lib/.build-id/2b/605f15632aaa2a6237f34f37aa1474773c5f6d
/usr/lib/.build-id/38
/usr/lib/.build-id/38/70138379db0cb14b73235992c9b0612a940d6a
/usr/lib/.build-id/38/cb3caa8de043d8ca5ba40a2db4b5d6cc9c8d76
/usr/lib/.build-id/4c
/usr/lib/.build-id/4c/33dd4cee43f8bcc705ac39955e5d16ed41887a
/usr/lib/.build-id/55
/usr/lib/.build-id/55/2e06520e674bd81cc590665870eb1ba0f20733
/usr/lib/.build-id/73
/usr/lib/.build-id/73/7a9edbca375d5dcef4d3e7a6f9cb4757eb788b
/usr/lib/.build-id/92
/usr/lib/.build-id/92/3c78db84cd8f1a34353971f773357e43d6f872
/usr/lib/.build-id/9d
/usr/lib/.build-id/9d/d074a264d153a06b8764fbda1bcd194702c751
/usr/lib/.build-id/b2
/usr/lib/.build-id/b2/5cfbf8de752a8cd186c36a2d67e08448dcbfc2
/usr/lib/.build-id/b5
/usr/lib/.build-id/b5/2b2401b3530fe92c594ed6f75e39c13ca9b3ec
/usr/lib/.build-id/c1
/usr/lib/.build-id/c1/3129a76ef5a7037079ae060039135e72f011a5
/usr/lib/.build-id/c1/8ebed2152ecb41dab89f936c3f51fb30043ac6
/usr/lib/.build-id/d0
/usr/lib/.build-id/d0/517cc9891b014ac58ba2396ade7646e54fa972
/usr/lib/.build-id/d3
/usr/lib/.build-id/d3/e7cf3db9fcf3c5e8498b578af82c82fd0250be
/usr/lib/.build-id/d6
/usr/lib/.build-id/d6/848ff2fdfcfdcad5df1d63e73bb19f0dcf79e4
/usr/lib/.build-id/e5
/usr/lib/.build-id/e5/23e8d7f35ca3eec17d20de40e9131b65b370cb
/usr/lib/.build-id/f7
/usr/lib/.build-id/f7/d3e73dedba06f23aefd5a936f09910d02b8aa1
/usr/lib/.build-id/fc
/usr/lib/.build-id/fc/1666478cac01279a52910fbf07ab864e6ab9ac
/usr/lib64/lagan
/usr/lib64/lagan/anal_gloc.pl
/usr/lib64/lagan/anchors
/usr/lib64/lagan/blosum62.txt
/usr/lib64/lagan/blosum62s.txt
/usr/lib64/lagan/glocal
/usr/lib64/lagan/nucmatrix.txt
/usr/lib64/lagan/order
/usr/lib64/lagan/rechaos.pl
/usr/lib64/lagan/supermap.pl
/usr/lib64/lagan/test.score
/usr/lib64/lagan/utils
/usr/lib64/lagan/utils/Glue
/usr/lib64/lagan/utils/bin2bl
/usr/lib64/lagan/utils/bin2mf
/usr/lib64/lagan/utils/cextract
/usr/lib64/lagan/utils/cmerge2.pl
/usr/lib64/lagan/utils/contigorder
/usr/lib64/lagan/utils/cstat
/usr/lib64/lagan/utils/dotplot
/usr/lib64/lagan/utils/draft.pl
/usr/lib64/lagan/utils/fa2xfa
/usr/lib64/lagan/utils/getbounds
/usr/lib64/lagan/utils/getcontigpos
/usr/lib64/lagan/utils/getlength
/usr/lib64/lagan/utils/getoverlap
/usr/lib64/lagan/utils/mextract.pl
/usr/lib64/lagan/utils/mf2bin.pl
/usr/lib64/lagan/utils/mpretty.pl
/usr/lib64/lagan/utils/mproject.pl
/usr/lib64/lagan/utils/mrun.pl
/usr/lib64/lagan/utils/mrunfile.pl
/usr/lib64/lagan/utils/mrunpairs.pl
/usr/lib64/lagan/utils/mviz.pl
/usr/lib64/lagan/utils/overlay
/usr/lib64/lagan/utils/rc
/usr/lib64/lagan/utils/scorealign
/usr/lib64/lagan/utils/scorecontigs
/usr/lib64/lagan/utils/seqmerge
/usr/lib64/lagan/xmfa2mfa.pl
/usr/share/doc/lagan
/usr/share/doc/lagan/LICENSE
/usr/share/doc/lagan/README.FIRST
/usr/share/doc/lagan/README.chaos
/usr/share/doc/lagan/README.lagan
/usr/share/doc/lagan/README.mlagan
/usr/share/doc/lagan/README.shuffle
/usr/share/doc/lagan/README.tools
/usr/share/doc/lagan/sample.fasta
/usr/share/doc/lagan/sample.params

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Fabrice Bellet, Sun Jun 9 21:38:13 2024