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Name: fastx_toolkit | Distribution: Fedora Project |
Version: 0.0.14 | Vendor: Fedora Project |
Release: 31.fc38 | Build date: Thu Jan 19 04:16:15 2023 |
Group: Unspecified | Build host: buildvm-x86-28.iad2.fedoraproject.org |
Size: 472526 | Source RPM: fastx_toolkit-0.0.14-31.fc38.src.rpm |
Packager: Fedora Project | |
Url: http://hannonlab.cshl.edu/fastx_toolkit/index.html | |
Summary: Tools to process short-reads FASTA/FASTQ files |
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. Next-Generation sequencing machines usually produce FASTA or FASTQ files, containing multiple short-reads sequences (possibly with quality information). The main processing of such FASTA/FASTQ files is mapping (aka aligning) the sequences to reference genomes or other databases using specialized programs. Example of such mapping programs are: Blat, SHRiMP, LastZ, MAQ and many many others. However, It is sometimes more productive to preprocess the FASTA/FASTQ files before mapping the sequences to the genome - manipulating the sequences to produce better mapping results. The FASTX-Toolkit tools perform some of these preprocessing tasks.
AGPLv3+
* Thu Jan 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-31 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Thu Jul 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-30 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-29 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-28 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-27 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
/usr/bin/fasta_clipping_histogram.pl /usr/bin/fasta_formatter /usr/bin/fasta_nucleotide_changer /usr/bin/fastq_masker /usr/bin/fastq_quality_boxplot_graph.sh /usr/bin/fastq_quality_converter /usr/bin/fastq_quality_filter /usr/bin/fastq_quality_trimmer /usr/bin/fastq_to_fasta /usr/bin/fastx_artifacts_filter /usr/bin/fastx_barcode_splitter.pl /usr/bin/fastx_clipper /usr/bin/fastx_collapser /usr/bin/fastx_nucleotide_distribution_graph.sh /usr/bin/fastx_nucleotide_distribution_line_graph.sh /usr/bin/fastx_quality_stats /usr/bin/fastx_renamer /usr/bin/fastx_reverse_complement /usr/bin/fastx_trimmer /usr/bin/fastx_uncollapser /usr/lib/.build-id /usr/lib/.build-id/29 /usr/lib/.build-id/29/3c6cf103325eae70c6a183441ae22058c089dd /usr/lib/.build-id/32 /usr/lib/.build-id/32/09972581c765fc1400eece959ef7d80cc890dc /usr/lib/.build-id/39 /usr/lib/.build-id/39/058c7f891e7a90bc801f467dd0aa0ffae020f5 /usr/lib/.build-id/3a /usr/lib/.build-id/3a/d0991245312721a8821dfccae81b94a6ddee16 /usr/lib/.build-id/5c /usr/lib/.build-id/5c/d3bb1b1397f5f2bc58a396d948252030d04fe2 /usr/lib/.build-id/5c/f438ab2658ac4f399b879ef62ccfbf82073fa8 /usr/lib/.build-id/64 /usr/lib/.build-id/64/64c874dec70bf70d02cc7ceb872b05e9e0d94f /usr/lib/.build-id/6a /usr/lib/.build-id/6a/811589dace2bab21d9710fbf535494839cb653 /usr/lib/.build-id/72 /usr/lib/.build-id/72/ad5d4a39302aaaf4df758c3422cde315cd59db /usr/lib/.build-id/79 /usr/lib/.build-id/79/1a28e38c7dc27aae5d07e6e3357aa034c5ae1b /usr/lib/.build-id/86 /usr/lib/.build-id/86/daaae62787a503748b21d71d1a7c9ccc570393 /usr/lib/.build-id/8c /usr/lib/.build-id/8c/ed04bfd92799b18ac0edcb8ed73b98df1fea3d /usr/lib/.build-id/a3 /usr/lib/.build-id/a3/e8ec5892390070765af8e594ba21924d0713c5 /usr/lib/.build-id/a4 /usr/lib/.build-id/a4/f32adfc324bf87b53e1cf2387ce7e100d50990 /usr/lib/.build-id/aa /usr/lib/.build-id/aa/d5dfcdce3867059c9a265d543c78479e14e5e4 /usr/share/doc/fastx_toolkit /usr/share/doc/fastx_toolkit/AUTHORS /usr/share/doc/fastx_toolkit/COPYING /usr/share/doc/fastx_toolkit/NEWS /usr/share/doc/fastx_toolkit/README /usr/share/doc/fastx_toolkit/THANKS
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Fabrice Bellet, Thu May 9 21:57:25 2024