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Name: fastx_toolkit | Distribution: Fedora Project |
Version: 0.0.14 | Vendor: Fedora Project |
Release: 31.fc38 | Build date: Thu Jan 19 04:24:30 2023 |
Group: Unspecified | Build host: buildvm-ppc64le-20.iad2.fedoraproject.org |
Size: 3090294 | Source RPM: fastx_toolkit-0.0.14-31.fc38.src.rpm |
Packager: Fedora Project | |
Url: http://hannonlab.cshl.edu/fastx_toolkit/index.html | |
Summary: Tools to process short-reads FASTA/FASTQ files |
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. Next-Generation sequencing machines usually produce FASTA or FASTQ files, containing multiple short-reads sequences (possibly with quality information). The main processing of such FASTA/FASTQ files is mapping (aka aligning) the sequences to reference genomes or other databases using specialized programs. Example of such mapping programs are: Blat, SHRiMP, LastZ, MAQ and many many others. However, It is sometimes more productive to preprocess the FASTA/FASTQ files before mapping the sequences to the genome - manipulating the sequences to produce better mapping results. The FASTX-Toolkit tools perform some of these preprocessing tasks.
AGPLv3+
* Thu Jan 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-31 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Thu Jul 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-30 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-29 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-28 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-27 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
/usr/bin/fasta_clipping_histogram.pl /usr/bin/fasta_formatter /usr/bin/fasta_nucleotide_changer /usr/bin/fastq_masker /usr/bin/fastq_quality_boxplot_graph.sh /usr/bin/fastq_quality_converter /usr/bin/fastq_quality_filter /usr/bin/fastq_quality_trimmer /usr/bin/fastq_to_fasta /usr/bin/fastx_artifacts_filter /usr/bin/fastx_barcode_splitter.pl /usr/bin/fastx_clipper /usr/bin/fastx_collapser /usr/bin/fastx_nucleotide_distribution_graph.sh /usr/bin/fastx_nucleotide_distribution_line_graph.sh /usr/bin/fastx_quality_stats /usr/bin/fastx_renamer /usr/bin/fastx_reverse_complement /usr/bin/fastx_trimmer /usr/bin/fastx_uncollapser /usr/lib/.build-id /usr/lib/.build-id/25 /usr/lib/.build-id/25/e7e1540a03ec1454dfc12ff7c3d91143e3f9a7 /usr/lib/.build-id/2e /usr/lib/.build-id/2e/78bb15d29ba1bd0839fa45e5e4bfd30431a6da /usr/lib/.build-id/40 /usr/lib/.build-id/40/d9fed17c557ab59f5504b24b7718e0d5de2e65 /usr/lib/.build-id/53 /usr/lib/.build-id/53/151be05df3058e35f09863d29ae33778f5937a /usr/lib/.build-id/5c /usr/lib/.build-id/5c/122c0a0ee4a7b1f66dd024f328c784a15c5615 /usr/lib/.build-id/5c/f76515fcf6f43fc8ce9704f3b16952191a117b /usr/lib/.build-id/6a /usr/lib/.build-id/6a/a65c74c2930c600ccbda8d0981535a8f12b99e /usr/lib/.build-id/71 /usr/lib/.build-id/71/38cc1711855151128aaebbf0cd17e02c09c789 /usr/lib/.build-id/81 /usr/lib/.build-id/81/20742ba9808024728c9cfaf6d0bb498af4926b /usr/lib/.build-id/96 /usr/lib/.build-id/96/5d412d6ba5fa62eaeaf1159f607fb859bcd06a /usr/lib/.build-id/d0 /usr/lib/.build-id/d0/15371650b1843e16a4557218e8c5346824a2a1 /usr/lib/.build-id/d9 /usr/lib/.build-id/d9/a384d623ef87743ca7055d2533f17579153308 /usr/lib/.build-id/dc /usr/lib/.build-id/dc/828f5e7271cf3b60dce8520e6a01c0d904369a /usr/lib/.build-id/ee /usr/lib/.build-id/ee/f6e75a0bb4a707825d2a2521544d0ab6a0760f /usr/lib/.build-id/f2 /usr/lib/.build-id/f2/5d5406ac8520bb4a723909f41df9c6aa79eb17 /usr/share/doc/fastx_toolkit /usr/share/doc/fastx_toolkit/AUTHORS /usr/share/doc/fastx_toolkit/COPYING /usr/share/doc/fastx_toolkit/NEWS /usr/share/doc/fastx_toolkit/README /usr/share/doc/fastx_toolkit/THANKS
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Fabrice Bellet, Thu May 9 22:29:55 2024