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Name: fastx_toolkit | Distribution: Fedora Project |
Version: 0.0.14 | Vendor: Fedora Project |
Release: 30.fc37 | Build date: Thu Jul 21 04:59:44 2022 |
Group: Unspecified | Build host: buildvm-ppc64le-26.iad2.fedoraproject.org |
Size: 3090198 | Source RPM: fastx_toolkit-0.0.14-30.fc37.src.rpm |
Packager: Fedora Project | |
Url: http://hannonlab.cshl.edu/fastx_toolkit/index.html | |
Summary: Tools to process short-reads FASTA/FASTQ files |
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. Next-Generation sequencing machines usually produce FASTA or FASTQ files, containing multiple short-reads sequences (possibly with quality information). The main processing of such FASTA/FASTQ files is mapping (aka aligning) the sequences to reference genomes or other databases using specialized programs. Example of such mapping programs are: Blat, SHRiMP, LastZ, MAQ and many many others. However, It is sometimes more productive to preprocess the FASTA/FASTQ files before mapping the sequences to the genome - manipulating the sequences to produce better mapping results. The FASTX-Toolkit tools perform some of these preprocessing tasks.
AGPLv3+
* Thu Jul 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-30 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-29 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-28 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-27 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Wed Aug 26 2020 Jeff Law <law@redhat.com> - 0.0.14-26 - No longer force C++11 mode * Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.14-25 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
/usr/bin/fasta_clipping_histogram.pl /usr/bin/fasta_formatter /usr/bin/fasta_nucleotide_changer /usr/bin/fastq_masker /usr/bin/fastq_quality_boxplot_graph.sh /usr/bin/fastq_quality_converter /usr/bin/fastq_quality_filter /usr/bin/fastq_quality_trimmer /usr/bin/fastq_to_fasta /usr/bin/fastx_artifacts_filter /usr/bin/fastx_barcode_splitter.pl /usr/bin/fastx_clipper /usr/bin/fastx_collapser /usr/bin/fastx_nucleotide_distribution_graph.sh /usr/bin/fastx_nucleotide_distribution_line_graph.sh /usr/bin/fastx_quality_stats /usr/bin/fastx_renamer /usr/bin/fastx_reverse_complement /usr/bin/fastx_trimmer /usr/bin/fastx_uncollapser /usr/lib/.build-id /usr/lib/.build-id/0c /usr/lib/.build-id/0c/4c2dc9110604a0ce8c5642222c84b947740b91 /usr/lib/.build-id/12 /usr/lib/.build-id/12/65ba2b6f6461cb10b46753031b429631835b13 /usr/lib/.build-id/20 /usr/lib/.build-id/20/f2bc71cc35028c37ed38278e14c956d496b616 /usr/lib/.build-id/2a /usr/lib/.build-id/2a/c6c5f8ea601efe50201f003053f3a662831fb4 /usr/lib/.build-id/3e /usr/lib/.build-id/3e/1689197fed1e829b308a185417901191774952 /usr/lib/.build-id/3e/cfe6589c1eaa730394f6c28a984d4878d75d95 /usr/lib/.build-id/5d /usr/lib/.build-id/5d/9d19eba4aeafe0ce2e3bbeef84a609029a95df /usr/lib/.build-id/74 /usr/lib/.build-id/74/2aa9dc2af9a27d49444503d0822bf37218f5fe /usr/lib/.build-id/7b /usr/lib/.build-id/7b/7beac5e26ff2bba499f79249f0159f8f8077aa /usr/lib/.build-id/7e /usr/lib/.build-id/7e/13257084c5a229ddd5132f8455ed67aa42b82e /usr/lib/.build-id/9f /usr/lib/.build-id/9f/77f6243dfa60691cd2909284f3a5859208c697 /usr/lib/.build-id/cc /usr/lib/.build-id/cc/91a659c235c0811e5934297c89a43feb377cc9 /usr/lib/.build-id/ce /usr/lib/.build-id/ce/4435a17b4d8f27044e9802b63514923f02e21a /usr/lib/.build-id/d0 /usr/lib/.build-id/d0/3283208cc972c14c020f27939534cbe5b93944 /usr/lib/.build-id/e1 /usr/lib/.build-id/e1/29c33abd9f05c667a19ef058a06b65eaac7ab3 /usr/share/doc/fastx_toolkit /usr/share/doc/fastx_toolkit/AUTHORS /usr/share/doc/fastx_toolkit/COPYING /usr/share/doc/fastx_toolkit/NEWS /usr/share/doc/fastx_toolkit/README /usr/share/doc/fastx_toolkit/THANKS
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Fabrice Bellet, Thu May 9 20:42:17 2024