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| Name: BEDTools | Distribution: Fedora Project |
| Version: 2.26.0 | Vendor: Fedora Project |
| Release: 1.el7 | Build date: Sun Jul 10 01:21:00 2016 |
| Group: Applications/Engineering | Build host: buildppc-02-nfs.phx2.fedoraproject.org |
| Size: 13824437 | Source RPM: BEDTools-2.26.0-1.el7.src.rpm |
| Packager: Fedora Project | |
| Url: https://github.com/arq5x/bedtools | |
| Summary: A flexible suite of utilities for comparing genomic features | |
The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by "streaming" several BEDTools together.
GPLv2+
* Sat Jul 09 2016 Adam Huffman <bloch@verdurin.com> - 2.26.0-1 - Update to latest upstream release 2.26.0 * Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 2.25.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild * Sat Sep 05 2015 Adam Huffman <bloch@verdurin.com> - 2.25.0-1 - Update to latest upstream release 2.25.0 - Disable upstreamed patches - Disable double path separator patch for now * Sun Aug 23 2015 Adam Huffman <bloch@verdurin.com> - 2.24.0-6 - Fix binary directory path * Sat Jul 18 2015 Adam Huffman <bloch@verdurin.com> - 2.24.0-5 - Re-enable 32-bit and ARM builds * Fri Jul 17 2015 Adam Huffman <bloch@verdurin.com> - 2.24.0-4 - Add temporary patches to fix 32-bit compilation derived from upstream commits * Sun Jul 12 2015 Adam Huffman <bloch@verdurin.com> - 2.24.0-3 - Disable i686 build until upstream fixes arrive * Fri Jul 03 2015 Peter Robinson <pbrobinson@fedoraproject.org> 2.24.0-2 - Disable hardened build - Exclude ARMv7 for the moment (tracked rhbz 1239119) * Wed Jul 01 2015 Adam Huffman <bloch@verdurin.com> - 2.24.0-1 - Disable debuginfo for now to re-enable build - Disable debuginfo-related patches for now * Tue Jun 16 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.23.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild * Mon Apr 06 2015 Adam Huffman <bloch@verdurin.com> - 2.23.0-2 - Simplify list of included binaries * Mon Mar 09 2015 Adam Huffman <bloch@verdurin.com> - 2.23.0-1 - Update to upstream 2.23.0 * Sat Dec 27 2014 Adam Huffman <bloch@verdurin.com> - 2.22.0-1 - Update to upstream 2.22.0 * Mon Aug 25 2014 Adam Huffman <bloch@verdurin.com> - 2.20.1-4 - Update debugedit patch - Reinstate gzstream patch * Fri Aug 15 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.20.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild * Sat Jun 14 2014 Adam Huffman <bloch@verdurin.com> - 2.20.1-2 - More path changes to fix debuginfo build * Sat Jun 07 2014 Adam Huffman <bloch@verdurin.com> - 2.20.1-1 - Update to upstream 2.20.1 - Build integrated docs and remove obsolete PDF manual in -docs subpackage * Fri Jun 06 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.19.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild * Wed Apr 16 2014 Adam Huffman <bloch@verdurin.com> - 2.19.1-2 - Fix for debugedit canonicalization error - Don't include jaccard, reldist and sample * Wed Apr 16 2014 Adam Huffman <bloch@verdurin.com> - 2.19.1-1 - Update to upstream 2.19.1 release * Sun Mar 02 2014 Adam Huffman <bloch@verdurin.com> - 2.19.0-1 - Update to upstream 2.19.0 release - Upstream now hosted at Github, not Google Code - Add three new tools * Tue Aug 06 2013 Adam Huffman <bloch@verdurin.com> - 2.17.0-1 - Update to upstream 2.17.0 release - Fix changed tarball directory name - Add four new tools * Fri Aug 02 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.15.0-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild * Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.15.0-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild * Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.15.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild * Tue Feb 28 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.15.0-3 - Rebuilt for c++ ABI breakage * Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.15.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild * Wed Jan 04 2012 Adam Huffman <verdurin@fedoraproject.org> - 2.15.0-1 - update to new upstream release 2.15.0 - new unified command line interface 'bedtools' - add python BR for new Makefile target to generate legacy commands - remove 'overlap' - add 'bedpeToBam', 'clusterBed', 'getOverlap', 'groupBy' - add 'multiIntersectBed', 'windowMaker' * Fri Oct 28 2011 Adam Huffman <bloch@verdurin.com> - 2.13.4-1 - new upstream minor bugfix release, see http://code.google.com/p/bedtools/ * Thu Sep 08 2011 Adam Huffman <bloch@verdurin.com> - 2.13.1-1 - new upstream minor release including fixes for tagBam * Tue Sep 06 2011 Adam Huffman <bloch@verdurin.com> - 2.13.0-1 - new upstream release 2.13.0 - new tools tagBam and nucBed * Tue Apr 12 2011 Adam Huffman <bloch@verdurin.com> - 2.12.0-1 - new upstream release 2.12.0 - new tools cuffToTrans and flankBed * Thu Feb 17 2011 Adam Huffman <bloch@verdurin.com> - 2.11.2-1 - new upstream release - now README.rst - remove groupBy command, now in filo - new fjoin command * Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.10.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild * Wed Nov 17 2010 Adam Huffman <bloch@verdurin.com> - 2.10.1-1 - new annotateBed tool - updated manual * Sun Sep 12 2010 Adam Huffman <bloch@verdurin.com> - 2.9.0-5 - add license for -docs * Wed Sep 01 2010 Adam Huffman <bloch@verdurin.com> - 2.9.0-4 - add -docs subpackage including PDF manual * Tue Aug 31 2010 Adam Huffman <bloch@verdurin.com> - 2.9.0-3 - remove 'curl' library properly * Tue Aug 31 2010 Adam Huffman <bloch@verdurin.com> - 2.9.0-2 - fix license and add LICENSE file - fix permissions of data/ - remove bundled 'curl' library * Wed Aug 25 2010 Adam Huffman <bloch@verdurin.com> - 2.9.0-1 - new upstream release - add new unionBedGraphs tool * Mon Aug 02 2010 Adam Huffman <bloch@verdurin.com> - 2.8.3-1 - initial version - override upstream CFLAGS - allow including gzstream header file
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