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TREE-PUZZLE is a computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood. It implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.
| Package | Summary | Distribution | Download |
| tree-puzzle-5.2-6mdv2011.0.i586.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva devel cooker for i586 | tree-puzzle-5.2-6mdv2011.0.i586.rpm |
| tree-puzzle-5.2-6mdv2011.0.x86_64.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva devel cooker for x86_64 | tree-puzzle-5.2-6mdv2011.0.x86_64.rpm |
| tree-puzzle-5.2-6mdv2011.0.x86_64.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2011 for x86_64 | tree-puzzle-5.2-6mdv2011.0.x86_64.rpm |
| tree-puzzle-5.2-6mdv2011.0.i586.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2011 for i586 | tree-puzzle-5.2-6mdv2011.0.i586.rpm |
| tree-puzzle-5.2-5mdv2010.1.i586.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2010.1 for i586 | tree-puzzle-5.2-5mdv2010.1.i586.rpm |
| tree-puzzle-5.2-5mdv2010.1.x86_64.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2010.1 for x86_64 | tree-puzzle-5.2-5mdv2010.1.x86_64.rpm |
| tree-puzzle-5.2-4mdv2010.0.i586.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2010.0 for i586 | tree-puzzle-5.2-4mdv2010.0.i586.rpm |
| tree-puzzle-5.2-4mdv2010.0.x86_64.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2010.0 for x86_64 | tree-puzzle-5.2-4mdv2010.0.x86_64.rpm |
| tree-puzzle-5.2-3mdv2009.0.i586.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2009.0 for i586 | tree-puzzle-5.2-3mdv2009.0.i586.rpm |
| tree-puzzle-5.2-3mdv2009.0.x86_64.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2009.0 for x86_64 | tree-puzzle-5.2-3mdv2009.0.x86_64.rpm |
| tree-puzzle-5.2-3mdv2009.0.x86_64.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2009.1 for x86_64 | tree-puzzle-5.2-3mdv2009.0.x86_64.rpm |
| tree-puzzle-5.2-3mdv2009.0.i586.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2009.1 for i586 | tree-puzzle-5.2-3mdv2009.0.i586.rpm |
| tree-puzzle-5.2-3mdv2008.0.i586.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2008.0 for i586 | tree-puzzle-5.2-3mdv2008.0.i586.rpm |
| tree-puzzle-5.2-3mdv2008.0.ppc.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva devel cooker for ppc | tree-puzzle-5.2-3mdv2008.0.ppc.rpm |
| tree-puzzle-5.2-3mdv2008.0.x86_64.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2008.0 for x86_64 | tree-puzzle-5.2-3mdv2008.0.x86_64.rpm |
| tree-puzzle-5.2-3mdv2007.1.i586.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2007.1 for i586 | tree-puzzle-5.2-3mdv2007.1.i586.rpm |
| tree-puzzle-5.2-3mdv2007.1.x86_64.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2007.1 for x86_64 | tree-puzzle-5.2-3mdv2007.1.x86_64.rpm |
| tree-puzzle-5.2-3mdv2007.0.sparc.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva devel cooker for sparc | tree-puzzle-5.2-3mdv2007.0.sparc.rpm |
| tree-puzzle-5.2-3mdv2007.0.i586.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2007.0 for i586 | tree-puzzle-5.2-3mdv2007.0.i586.rpm |
| tree-puzzle-5.2-3mdv2007.0.x86_64.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2007.0 for x86_64 | tree-puzzle-5.2-3mdv2007.0.x86_64.rpm |
| tree-puzzle-5.2-1mdk.i586.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva devel 2006.0 for i586 | tree-puzzle-5.2-1mdk.i586.rpm |
| tree-puzzle-5.2-1mdk.x86_64.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva devel 2006.0 for x86_64 | tree-puzzle-5.2-1mdk.x86_64.rpm |
| tree-puzzle-5.2-1mdk.i586.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2006.0 for i586 | tree-puzzle-5.2-1mdk.i586.rpm |
| tree-puzzle-5.2-1mdk.x86_64.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 2006.0 for x86_64 | tree-puzzle-5.2-1mdk.x86_64.rpm |
| tree-puzzle-5.2-1mdk.i586.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 10.2 for i586 | tree-puzzle-5.2-1mdk.i586.rpm |
| tree-puzzle-5.2-1mdk.x86_64.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 10.2 for x86_64 | tree-puzzle-5.2-1mdk.x86_64.rpm |
| tree-puzzle-5.2-1mdk.i586.html | Maximum likelihood analysis for nucleotide, amino acid and two-state data | Mandriva 10.1 for i586 | tree-puzzle-5.2-1mdk.i586.rpm |
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