Output analysis and diagnostics for MCMC

as.mcmc	Markov Chain Monte Carlo Objects
as.mcmc.list	Replicated Markov Chain Monte Carlo Objects
as.ts.mcmc	Coerce mcmc object to time series
as.ts.msms	Coerce mcmc object to time series
autocorr	Autocorrelation function for Markov chains
autocorr.plot	Plot autocorrelations for Markov Chains
codamenu	Main menu driver for the coda package
Cramer	The Cramer-von Mises Distribution
crosscorr	Cross correlations for MCMC output
crosscorr.plot	Plot image of correlation matrix
densplot	Probability density function estimate from MCMC output
gelman.diag	Gelman and Rubin's convergence diagnostic
gelman.plot	Gelman-Rubin-Brooks plot
geweke.diag	Geweke's convergence diagnostic
geweke.plot	Geweke-Brooks plot
heidel.diag	Heidelberger and Welch's convergence diagnostic
is.mcmc	Markov Chain Monte Carlo Objects
is.mcmc.list	Replicated Markov Chain Monte Carlo Objects
mcmc	Markov Chain Monte Carlo Objects
mcmc.list	Replicated Markov Chain Monte Carlo Objects
multi.menu	Choose multiple options from a menu
pcramer	The Cramer-von Mises Distribution
plot.mcmc	Summary plots of mcmc objects
raftery.diag	Raftery and Lewis's diagnostic
read.and.check	Read data interactively and check that it satisfies conditions
read.bugs	Read BUGS output files
read.bugs.interactive	Read BUGS output files interactively
spectrum0	Estimate spectral density at zero
summary.mcmc	Summary statistics for Markov Chain Monte Carlo chains
thin	Thinning interval
traceplot	Trace plot of MCMC output
upgrade.mcmc	Upgrade mcmc objects in obsolete format
window.mcmc	Time windows for mcmc objects