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tagger-1.3-1.el4 RPM for i386

From SourceForge / t / ta / tagger

Name: tagger Distribution: Unknown
Version: 1.3 Vendor: Christian Iseli <Christian.Iseli@licr.org>
Release: 1.el4 Build date: Wed May 23 16:50:18 2007
Group: Applications/Engineering Build host: sib-pc2
Size: 83993 Source RPM: tagger-1.3-1.el4.src.rpm
Packager: Christian Iseli <Christian.Iseli@licr.org>
Url: http://tagger.sourceforge.net
Summary: Find exact or near exact matches of short probes on genomes
 
The tagger and fetchGWI tools provide a rapid mean to search for exact or near
exact matches between oligonucleotide  queries  and  sequence  databases
comprising entire genomes or transcriptomes.

Provides

Requires

Copyright

GPL

Signatures

internal MD5: ab959f6093bbd7b695b8ae368984ded3

Changelog

* Wed May 23 2007 Christian Iseli <Christian.Iseli@licr.org> 1.3-1
  - version 1.3
  - remove fixGWIac from the list of installed binaries
  - 2007-05-23 16:12  c4chris
  	* genwin.c: Tweak for i386 (32 bits).
  - 2007-05-23 16:05  c4chris
  	* fetchGWI.c, tagger.spec: Bump to version 1.3.
  - 2007-05-23 15:58  c4chris
  	* fetchGWI.1: Document -F option.
  - 2007-05-22 14:06  c4chris
  	* fetchGWI.c: Implement short query searches on compressed index
  	  files.
  - 2007-05-22 13:12  c4chris
  	* fetchGWI.c: Add -F force option.
  - 2007-05-19 01:44  c4chris
  	* fetchGWI.c: Fix typo.
  - 2007-05-17 00:49  c4chris
  	* Makefile: Remove fixGWIac.c which should be pretty useless now.
  - 2007-05-17 00:46  c4chris
  	* fixGWIac.c: Remove fixGWIac.c which should be pretty useless now.
  - 2007-05-16 23:55  c4chris
  	* fetchGWI.c, sortGWI.c: Silence compiler warnings.
  - 2007-05-16 23:54  c4chris
  	* dumpGWI.c: Tweak for i386 (32 bits).
  - 2007-05-16 23:14  c4chris
  	* fetchGWI.c, sortGWI.c: Tweak for i386 (32 bits).
  - 2007-05-16 02:05  c4chris
  	* dumpGWI.c, fetchGWI.c, sortGWI.c: Implement 12 nt instead of 8
  	  for secondary index.
  - 2007-04-27 14:49  c4chris
  	* tagger.spec: Update changelog.
* Fri Apr 27 2007 Christian Iseli <Christian.Iseli@licr.org> 1.2-1
  - version 1.2
  - add sortGWI.1 and genwin.1 man pages
  - 2007-04-27 14:47  c4chris
  	* fetchGWI.c, tagger.spec: Bump to version 1.2.
  - 2007-04-27 14:43  c4chris
  	* genwin.1, genwin.c: Add -c switch to genwin for circular
  	  sequences.
  - 2007-04-27 14:27  c4chris
  	* dumpGWI.c, fetchGWI.c, fixGWIac.c, genwin.c, sortGWI.c: Change
  	  long offset to 30 bits, with 14 bits AC idx.
  - 2007-04-23 14:14  c4chris
  	* sortGWI.1: Add sortGWI.1.
  - 2007-04-23 14:00  c4chris
  	* fetchGWI.1, genwin.1: Add genwin.1.
  - 2007-03-28 14:35  c4chris
  	* tagger.spec: Update changelog.
* Wed Mar 28 2007 Christian Iseli <Christian.Iseli@licr.org> 1.1-1
  - version 1.1
  - 2007-03-28 14:32  c4chris
  	* tagger.spec: Bump to version 1.1.
  - 2007-03-28 14:31  c4chris
  	* fetchGWI.1, fetchGWI.c: Add -v command line switch.
  - 2007-03-23 16:04  c4chris
  	* fetchGWI.1: Add new switch info in the man page.
  - 2007-03-22 02:15  c4chris
  	* fetchGWI.c: Allow any number of mismatches.
  - 2007-03-21 22:09  c4chris
  	* fetchGWI.c: Add -d command line switch.
  - 2007-03-19 19:46  c4chris
  	* fetchGWI.c, genwin.c: Fix leftover short.  Silence gcc warning.
  - 2007-03-18 23:11  c4chris
  	* genwin.c: Use a binary tree to track AC names and index.
* Thu Mar 15 2007 Christian Iseli <Christian.Iseli@licr.org> 1.0-1
  - Initial RPM release.

Files

/usr/bin/decodeGWI
/usr/bin/dumpGWI
/usr/bin/fetchGWI
/usr/bin/genwin
/usr/bin/sortGWI
/usr/bin/tagger
/usr/share/doc/tagger-1.3
/usr/share/doc/tagger-1.3/COPYING
/usr/share/doc/tagger-1.3/README
/usr/share/doc/tagger-1.3/runme
/usr/share/man/man1/fetchGWI.1.gz
/usr/share/man/man1/genwin.1.gz
/usr/share/man/man1/sortGWI.1.gz

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Fabrice Bellet, Tue Oct 7 01:28:47 2008