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| Name: emboss | Distribution: Mandrakelinux |
| Version: 2.8.0 | Vendor: Mandrakesoft |
| Release: 2mdk | Build date: Wed Jul 21 11:54:06 2004 |
| Group: Sciences/Biology | Build host: n2.mandrakesoft.com |
| Size: 18974202 | Source RPM: emboss-2.8.0-2mdk.src.rpm |
| Packager: Guillaume Rousse <guillomovitch@mandrake.org> | |
| Url: http://www.emboss.org | |
| Summary: The European Molecular Biology Open Software Suite | |
EMBOSS is a new, free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open source spirit. EMBOSS also integrates a range of currently available packages and tools for sequence analysis into a seamless whole. Reference for EMBOSS: Rice,P. Longden,I. and Bleasby,A. "EMBOSS: The European Molecular Biology Open Software Suite" Trends in Genetics June 2000, vol 16, No 6. pp.276-277
GPL/LGPL
* Wed Jul 21 2004 Guillaume Rousse <guillomovitch@mandrake.org> 2.8.0-2mdk - remove installed java stuff * Tue Dec 30 2003 Guillaume Rousse <guillomovitch@mandrake.org> 2.8.0-1mdk - new version - changed name to emboss, mixed cases sucks - fixed conflicts - rediff patch * Fri Apr 25 2003 Guillaume Rousse <g.rousse@linux-mandrake.com> 2.6.0-2mdk - fixed buildrequires (Stefan van der Eijk <stefan@eijk.nu>) * Fri Jan 24 2003 Guillaume Rousse <g.rousse@linux-mandrake.com> 2.6.0-1mdk - first mdk release with a spec stolen from Luc Ducazu <luc@biolinux.org> - patched jemboss Makefile to allows building - split library packages - env initialisation via scripts in /etc/profile.d - config file in /etc - noreplace for config files
/etc/emboss.default /etc/profile.d/emboss.csh /etc/profile.d/emboss.sh /usr/bin/aaindexextract /usr/bin/abiview /usr/bin/acdc /usr/bin/acdpretty /usr/bin/acdtable /usr/bin/acdvalid /usr/bin/antigenic /usr/bin/backtranseq /usr/bin/banana /usr/bin/biosed /usr/bin/btwisted /usr/bin/cai /usr/bin/chaos /usr/bin/charge /usr/bin/checktrans /usr/bin/chips /usr/bin/cirdna /usr/bin/codcmp /usr/bin/coderet /usr/bin/compseq /usr/bin/cons /usr/bin/cpgplot /usr/bin/cpgreport /usr/bin/cusp /usr/bin/cutgextract /usr/bin/cutseq /usr/bin/dan /usr/bin/dbiblast /usr/bin/dbifasta /usr/bin/dbiflat /usr/bin/dbigcg /usr/bin/degapseq /usr/bin/descseq /usr/bin/diffseq /usr/bin/digest /usr/bin/distmat /usr/bin/dotmatcher /usr/bin/dotpath /usr/bin/dottup /usr/bin/dreg /usr/bin/einverted /usr/bin/embossdata /usr/bin/embossversion /usr/bin/emma-emboss /usr/bin/emowse /usr/bin/entret /usr/bin/epestfind /usr/bin/eprimer3 /usr/bin/equicktandem /usr/bin/est2genome /usr/bin/etandem /usr/bin/extractfeat /usr/bin/extractseq /usr/bin/findkm /usr/bin/freak /usr/bin/fuzznuc /usr/bin/fuzzpro /usr/bin/fuzztran /usr/bin/garnier /usr/bin/geecee /usr/bin/getorf /usr/bin/helixturnhelix /usr/bin/hmoment /usr/bin/iep /usr/bin/infoalign /usr/bin/infoseq /usr/bin/isochore /usr/bin/jembossctl /usr/bin/lindna /usr/bin/listor /usr/bin/marscan /usr/bin/maskfeat /usr/bin/maskseq /usr/bin/matcher /usr/bin/megamerger /usr/bin/merger-emboss /usr/bin/msbar /usr/bin/mwcontam /usr/bin/mwfilter /usr/bin/needle /usr/bin/newcpgreport /usr/bin/newcpgseek /usr/bin/newseq /usr/bin/noreturn /usr/bin/notseq /usr/bin/nthseq /usr/bin/octanol /usr/bin/oddcomp /usr/bin/palindrome /usr/bin/pasteseq /usr/bin/patmatdb /usr/bin/patmatmotifs /usr/bin/pepcoil /usr/bin/pepinfo /usr/bin/pepnet /usr/bin/pepstats /usr/bin/pepwheel /usr/bin/pepwindow /usr/bin/pepwindowall /usr/bin/plotcon /usr/bin/plotorf /usr/bin/polydot /usr/bin/preg /usr/bin/prettyplot /usr/bin/prettyseq /usr/bin/primersearch /usr/bin/printsextract /usr/bin/profit /usr/bin/prophecy /usr/bin/prophet /usr/bin/prosextract /usr/bin/pscan /usr/bin/rebaseextract /usr/bin/recoder /usr/bin/redata /usr/bin/remap /usr/bin/restover /usr/bin/restrict /usr/bin/revseq /usr/bin/runJemboss.csh /usr/bin/seealso /usr/bin/seqmatchall /usr/bin/seqret /usr/bin/seqretsplit /usr/bin/showalign /usr/bin/showdb /usr/bin/showfeat /usr/bin/showorf /usr/bin/showseq /usr/bin/shuffleseq /usr/bin/sigcleave /usr/bin/silent /usr/bin/sirna /usr/bin/sixpack /usr/bin/skipseq /usr/bin/splitter /usr/bin/stretcher /usr/bin/stssearch /usr/bin/supermatcher /usr/bin/syco /usr/bin/tcode /usr/bin/textsearch /usr/bin/tfextract /usr/bin/tfm /usr/bin/tfscan /usr/bin/tmap /usr/bin/tranalign /usr/bin/transeq /usr/bin/trimest /usr/bin/trimseq /usr/bin/twofeat /usr/bin/union /usr/bin/vectorstrip /usr/bin/water /usr/bin/whichdb /usr/bin/wobble /usr/bin/wordcount /usr/bin/wordmatch /usr/bin/wossname /usr/bin/yank-emboss /usr/share/EMBOSS /usr/share/EMBOSS/acd /usr/share/EMBOSS/acd/aaindexextract.acd /usr/share/EMBOSS/acd/abiview.acd /usr/share/EMBOSS/acd/ajbad.acd /usr/share/EMBOSS/acd/ajfeatest.acd /usr/share/EMBOSS/acd/ajtest.acd /usr/share/EMBOSS/acd/antigenic.acd /usr/share/EMBOSS/acd/backtranseq.acd /usr/share/EMBOSS/acd/banana.acd /usr/share/EMBOSS/acd/biosed.acd /usr/share/EMBOSS/acd/btwisted.acd /usr/share/EMBOSS/acd/cai.acd /usr/share/EMBOSS/acd/chaos.acd /usr/share/EMBOSS/acd/charge.acd /usr/share/EMBOSS/acd/checktrans.acd /usr/share/EMBOSS/acd/chips.acd /usr/share/EMBOSS/acd/cirdna.acd /usr/share/EMBOSS/acd/codcmp.acd /usr/share/EMBOSS/acd/coderet.acd /usr/share/EMBOSS/acd/codes.english /usr/share/EMBOSS/acd/complex.acd /usr/share/EMBOSS/acd/compseq.acd /usr/share/EMBOSS/acd/cons.acd /usr/share/EMBOSS/acd/corbatest.acd /usr/share/EMBOSS/acd/cpgplot.acd /usr/share/EMBOSS/acd/cpgreport.acd /usr/share/EMBOSS/acd/cusp.acd /usr/share/EMBOSS/acd/cutgextract.acd /usr/share/EMBOSS/acd/cutseq.acd /usr/share/EMBOSS/acd/dan.acd /usr/share/EMBOSS/acd/dbiblast.acd /usr/share/EMBOSS/acd/dbifasta.acd /usr/share/EMBOSS/acd/dbiflat.acd /usr/share/EMBOSS/acd/dbigcg.acd /usr/share/EMBOSS/acd/degapseq.acd /usr/share/EMBOSS/acd/demoalign.acd /usr/share/EMBOSS/acd/demofeatures.acd /usr/share/EMBOSS/acd/demolist.acd /usr/share/EMBOSS/acd/demoreport.acd /usr/share/EMBOSS/acd/demosequence.acd /usr/share/EMBOSS/acd/demostring.acd /usr/share/EMBOSS/acd/demotable.acd /usr/share/EMBOSS/acd/descseq.acd /usr/share/EMBOSS/acd/diffseq.acd /usr/share/EMBOSS/acd/digest.acd /usr/share/EMBOSS/acd/distmat.acd /usr/share/EMBOSS/acd/dotmatcher.acd /usr/share/EMBOSS/acd/dotpath.acd /usr/share/EMBOSS/acd/dottup.acd /usr/share/EMBOSS/acd/dreg.acd /usr/share/EMBOSS/acd/einverted.acd /usr/share/EMBOSS/acd/embossdata.acd /usr/share/EMBOSS/acd/embossversion.acd /usr/share/EMBOSS/acd/emma.acd /usr/share/EMBOSS/acd/emowse.acd /usr/share/EMBOSS/acd/entrails.acd /usr/share/EMBOSS/acd/entret.acd /usr/share/EMBOSS/acd/epestfind.acd /usr/share/EMBOSS/acd/eprimer3.acd /usr/share/EMBOSS/acd/equicktandem.acd /usr/share/EMBOSS/acd/est2genome.acd /usr/share/EMBOSS/acd/etandem.acd /usr/share/EMBOSS/acd/extractfeat.acd /usr/share/EMBOSS/acd/extractseq.acd /usr/share/EMBOSS/acd/findkm.acd /usr/share/EMBOSS/acd/freak.acd /usr/share/EMBOSS/acd/fuzznuc.acd /usr/share/EMBOSS/acd/fuzzpro.acd /usr/share/EMBOSS/acd/fuzztran.acd /usr/share/EMBOSS/acd/garnier.acd /usr/share/EMBOSS/acd/geecee.acd /usr/share/EMBOSS/acd/getorf.acd /usr/share/EMBOSS/acd/groups.standard /usr/share/EMBOSS/acd/helixturnhelix.acd /usr/share/EMBOSS/acd/histogramtest.acd /usr/share/EMBOSS/acd/hmoment.acd /usr/share/EMBOSS/acd/iep.acd /usr/share/EMBOSS/acd/infoalign.acd /usr/share/EMBOSS/acd/infoseq.acd /usr/share/EMBOSS/acd/isochore.acd /usr/share/EMBOSS/acd/lindna.acd /usr/share/EMBOSS/acd/listor.acd /usr/share/EMBOSS/acd/marscan.acd /usr/share/EMBOSS/acd/maskfeat.acd /usr/share/EMBOSS/acd/maskseq.acd /usr/share/EMBOSS/acd/matcher.acd /usr/share/EMBOSS/acd/megamerger.acd /usr/share/EMBOSS/acd/merger.acd /usr/share/EMBOSS/acd/msbar.acd /usr/share/EMBOSS/acd/mwcontam.acd /usr/share/EMBOSS/acd/mwfilter.acd /usr/share/EMBOSS/acd/needle.acd /usr/share/EMBOSS/acd/newcoils.acd /usr/share/EMBOSS/acd/newcpgreport.acd /usr/share/EMBOSS/acd/newcpgseek.acd /usr/share/EMBOSS/acd/newseq.acd /usr/share/EMBOSS/acd/noreturn.acd /usr/share/EMBOSS/acd/notseq.acd /usr/share/EMBOSS/acd/nthseq.acd /usr/share/EMBOSS/acd/octanol.acd /usr/share/EMBOSS/acd/oddcomp.acd /usr/share/EMBOSS/acd/palindrome.acd /usr/share/EMBOSS/acd/pasteseq.acd /usr/share/EMBOSS/acd/patmatdb.acd /usr/share/EMBOSS/acd/patmatmotifs.acd /usr/share/EMBOSS/acd/patmattest.acd /usr/share/EMBOSS/acd/pepcoil.acd /usr/share/EMBOSS/acd/pepinfo.acd /usr/share/EMBOSS/acd/pepnet.acd /usr/share/EMBOSS/acd/pepstats.acd /usr/share/EMBOSS/acd/pepwheel.acd /usr/share/EMBOSS/acd/pepwindow.acd /usr/share/EMBOSS/acd/pepwindowall.acd /usr/share/EMBOSS/acd/plotcon.acd /usr/share/EMBOSS/acd/plotorf.acd /usr/share/EMBOSS/acd/polydot.acd /usr/share/EMBOSS/acd/preg.acd /usr/share/EMBOSS/acd/prettyplot.acd /usr/share/EMBOSS/acd/prettyseq.acd /usr/share/EMBOSS/acd/prima.acd /usr/share/EMBOSS/acd/primers.acd /usr/share/EMBOSS/acd/primersearch.acd /usr/share/EMBOSS/acd/printsextract.acd /usr/share/EMBOSS/acd/profit.acd /usr/share/EMBOSS/acd/prophecy.acd /usr/share/EMBOSS/acd/prophet.acd /usr/share/EMBOSS/acd/prosextract.acd /usr/share/EMBOSS/acd/pscan.acd /usr/share/EMBOSS/acd/rebaseextract.acd /usr/share/EMBOSS/acd/recoder.acd /usr/share/EMBOSS/acd/redata.acd /usr/share/EMBOSS/acd/remap.acd /usr/share/EMBOSS/acd/restover.acd /usr/share/EMBOSS/acd/restrict.acd /usr/share/EMBOSS/acd/revseq.acd /usr/share/EMBOSS/acd/sections.standard /usr/share/EMBOSS/acd/seealso.acd /usr/share/EMBOSS/acd/seqinfo.acd /usr/share/EMBOSS/acd/seqmatchall.acd /usr/share/EMBOSS/acd/seqret.acd /usr/share/EMBOSS/acd/seqretall.acd /usr/share/EMBOSS/acd/seqretallfeat.acd /usr/share/EMBOSS/acd/seqretset.acd /usr/share/EMBOSS/acd/seqretsingle.acd /usr/share/EMBOSS/acd/seqretsplit.acd /usr/share/EMBOSS/acd/seqrettype.acd /usr/share/EMBOSS/acd/showalign.acd /usr/share/EMBOSS/acd/showdb.acd /usr/share/EMBOSS/acd/showfeat.acd /usr/share/EMBOSS/acd/showorf.acd /usr/share/EMBOSS/acd/showseq.acd /usr/share/EMBOSS/acd/shuffleseq.acd /usr/share/EMBOSS/acd/sigcleave.acd /usr/share/EMBOSS/acd/silent.acd /usr/share/EMBOSS/acd/sirna.acd /usr/share/EMBOSS/acd/sixpack.acd /usr/share/EMBOSS/acd/skipseq.acd /usr/share/EMBOSS/acd/splitter.acd /usr/share/EMBOSS/acd/stretcher.acd /usr/share/EMBOSS/acd/stssearch.acd /usr/share/EMBOSS/acd/supermatcher.acd /usr/share/EMBOSS/acd/syco.acd /usr/share/EMBOSS/acd/tcode.acd /usr/share/EMBOSS/acd/testplot.acd /usr/share/EMBOSS/acd/textsearch.acd /usr/share/EMBOSS/acd/tfextract.acd /usr/share/EMBOSS/acd/tfm.acd /usr/share/EMBOSS/acd/tfscan.acd /usr/share/EMBOSS/acd/tmap.acd /usr/share/EMBOSS/acd/tranalign.acd /usr/share/EMBOSS/acd/transeq.acd /usr/share/EMBOSS/acd/treetypedisplay.acd /usr/share/EMBOSS/acd/trimest.acd /usr/share/EMBOSS/acd/trimseq.acd /usr/share/EMBOSS/acd/twofeat.acd /usr/share/EMBOSS/acd/union.acd /usr/share/EMBOSS/acd/vectorstrip.acd /usr/share/EMBOSS/acd/water.acd /usr/share/EMBOSS/acd/whichdb.acd /usr/share/EMBOSS/acd/wobble.acd /usr/share/EMBOSS/acd/wordcount.acd /usr/share/EMBOSS/acd/wordmatch.acd /usr/share/EMBOSS/acd/wossname.acd /usr/share/EMBOSS/acd/yank.acd /usr/share/EMBOSS/data /usr/share/EMBOSS/data/AAINDEX /usr/share/EMBOSS/data/AAINDEX/dummyfile /usr/share/EMBOSS/data/CODONS /usr/share/EMBOSS/data/CODONS/Eacc.cut /usr/share/EMBOSS/data/CODONS/Eadenovirus5.cut /usr/share/EMBOSS/data/CODONS/Eadenovirus7.cut /usr/share/EMBOSS/data/CODONS/Eaidlav.cut /usr/share/EMBOSS/data/CODONS/Eanasp.cut /usr/share/EMBOSS/data/CODONS/Eani.cut /usr/share/EMBOSS/data/CODONS/Eani_h.cut /usr/share/EMBOSS/data/CODONS/Eanidmit.cut /usr/share/EMBOSS/data/CODONS/Easn.cut /usr/share/EMBOSS/data/CODONS/Eath.cut /usr/share/EMBOSS/data/CODONS/Eatu.cut /usr/share/EMBOSS/data/CODONS/Eavi.cut /usr/share/EMBOSS/data/CODONS/Ebja.cut /usr/share/EMBOSS/data/CODONS/Ebly.cut /usr/share/EMBOSS/data/CODONS/Ebme.cut /usr/share/EMBOSS/data/CODONS/Ebmo.cut /usr/share/EMBOSS/data/CODONS/Ebna.cut /usr/share/EMBOSS/data/CODONS/Ebov.cut /usr/share/EMBOSS/data/CODONS/Ebovsp.cut /usr/share/EMBOSS/data/CODONS/Ebst.cut /usr/share/EMBOSS/data/CODONS/Ebsu.cut /usr/share/EMBOSS/data/CODONS/Ebsu_h.cut /usr/share/EMBOSS/data/CODONS/Ecac.cut /usr/share/EMBOSS/data/CODONS/Ecal.cut /usr/share/EMBOSS/data/CODONS/Eccr.cut /usr/share/EMBOSS/data/CODONS/Ecel.cut /usr/share/EMBOSS/data/CODONS/Echi.cut /usr/share/EMBOSS/data/CODONS/Echicken.cut /usr/share/EMBOSS/data/CODONS/Echisp.cut /usr/share/EMBOSS/data/CODONS/Echk.cut /usr/share/EMBOSS/data/CODONS/Echmp.cut /usr/share/EMBOSS/data/CODONS/Echnt.cut /usr/share/EMBOSS/data/CODONS/Echos.cut /usr/share/EMBOSS/data/CODONS/Echzm.cut /usr/share/EMBOSS/data/CODONS/Echzmrubp.cut /usr/share/EMBOSS/data/CODONS/Ecpx.cut /usr/share/EMBOSS/data/CODONS/Ecre.cut /usr/share/EMBOSS/data/CODONS/Ecrisp.cut /usr/share/EMBOSS/data/CODONS/Ectr.cut /usr/share/EMBOSS/data/CODONS/Edayhoff.cut /usr/share/EMBOSS/data/CODONS/Eddi.cut /usr/share/EMBOSS/data/CODONS/Eddi_h.cut /usr/share/EMBOSS/data/CODONS/Edog.cut /usr/share/EMBOSS/data/CODONS/Edro.cut /usr/share/EMBOSS/data/CODONS/Edro_h.cut /usr/share/EMBOSS/data/CODONS/Edrosophila.cut /usr/share/EMBOSS/data/CODONS/Eeca.cut /usr/share/EMBOSS/data/CODONS/Eeco.cut /usr/share/EMBOSS/data/CODONS/Eeco_h.cut /usr/share/EMBOSS/data/CODONS/Eecoli.cut /usr/share/EMBOSS/data/CODONS/Ef1.cut /usr/share/EMBOSS/data/CODONS/Efish.cut /usr/share/EMBOSS/data/CODONS/Efmdvpolyp.cut /usr/share/EMBOSS/data/CODONS/Eham.cut /usr/share/EMBOSS/data/CODONS/Ehha.cut /usr/share/EMBOSS/data/CODONS/Ehin.cut /usr/share/EMBOSS/data/CODONS/Ehma.cut /usr/share/EMBOSS/data/CODONS/Ehum.cut /usr/share/EMBOSS/data/CODONS/Ehuman.cut /usr/share/EMBOSS/data/CODONS/Ekla.cut /usr/share/EMBOSS/data/CODONS/Ekpn.cut /usr/share/EMBOSS/data/CODONS/Ella.cut /usr/share/EMBOSS/data/CODONS/Emac.cut /usr/share/EMBOSS/data/CODONS/Emaize.cut /usr/share/EMBOSS/data/CODONS/Emam_h.cut /usr/share/EMBOSS/data/CODONS/Emixlg.cut /usr/share/EMBOSS/data/CODONS/Emouse.cut /usr/share/EMBOSS/data/CODONS/Emsa.cut /usr/share/EMBOSS/data/CODONS/Emse.cut /usr/share/EMBOSS/data/CODONS/Emta.cut /usr/share/EMBOSS/data/CODONS/Emtu.cut /usr/share/EMBOSS/data/CODONS/Emus.cut /usr/share/EMBOSS/data/CODONS/Emussp.cut /usr/share/EMBOSS/data/CODONS/Emva.cut /usr/share/EMBOSS/data/CODONS/Emze.cut /usr/share/EMBOSS/data/CODONS/Emzecp.cut /usr/share/EMBOSS/data/CODONS/Encr.cut /usr/share/EMBOSS/data/CODONS/Eneu.cut /usr/share/EMBOSS/data/CODONS/Engo.cut /usr/share/EMBOSS/data/CODONS/Eoncsp.cut /usr/share/EMBOSS/data/CODONS/Epae.cut /usr/share/EMBOSS/data/CODONS/Epea.cut /usr/share/EMBOSS/data/CODONS/Epet.cut 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Fabrice Bellet, Mon May 20 09:20:32 2013