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R-qtl-1.29.2-1.fc18 RPM for s390

From Fedora 18 updates for s390

Name: R-qtl Distribution: Koji
Version: 1.29.2 Vendor: Fedora Project
Release: 1.fc18 Build date: Tue Dec 24 05:00:20 2013
Group: Applications/Engineering Build host: devel3.s390.bos.redhat.com
Size: 5868202 Source RPM: R-qtl-1.29.2-1.fc18.src.rpm
Packager: Fedora Project
Url: http://www.rqtl.org/
Summary: Tools for analyzing QTL experiments
R-qtl is an extensible, interactive environment for mapping
quantitative trait loci (QTLs) in experimental crosses. Our goal is to
make complex QTL mapping methods widely accessible and allow users to
focus on modeling rather than computing.

A key component of computational methods for QTL mapping is the hidden
Markov model (HMM) technology for dealing with missing genotype
data. We have implemented the main HMM algorithms, with allowance for
the presence of genotyping errors, for backcrosses, intercrosses, and
phase-known four-way crosses.

The current version of R-qtl includes facilities for estimating
genetic maps, identifying genotyping errors, and performing single-QTL
genome scans and two-QTL, two-dimensional genome scans, by interval
mapping (with the EM algorithm), Haley-Knott regression, and multiple
imputation. All of this may be done in the presence of covariates
(such as sex, age or treatment). One may also fit higher-order QTL
models by multiple imputation and Haley-Knott regression.

Provides

Requires

License

GPLv3

Changelog

* Sat Dec 21 2013 Mattias Ellert <mattias.ellert@fysast.uu.se> - 1.29.2-1
  - Update to 1.29.2
  - Add BR for blas-devel and lapack-devel
* Tue Oct 15 2013 Mattias Ellert <mattias.ellert@fysast.uu.se> - 1.28.19-1
  - Update to 1.28.19
* Fri Aug 02 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.27.10-3
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
* Wed Apr 17 2013 Tom Callaway <spot@fedoraproject.org> - 1.27.10-2
  - rebuild for R3
* Thu Apr 11 2013 Pierre-Yves Chibon <pingou@pingoured.fr> - 1.27.10-1
  - Update to 1.27.10
* Thu Apr 11 2013 Tom Callaway <spot@fedoraproject.org> - 1.26.14-3
  - rebuild for R3
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.26.14-2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
* Tue Dec 11 2012 Mattias Ellert <mattias.ellert@fysast.uu.se> - 1.26.14-1
  - New upstream release
* Tue Nov 13 2012 Mattias Ellert <mattias.ellert@fysast.uu.se> - 1.25.15-1
  - New upstream release
* Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.23.16-2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
* Fri Mar 23 2012 Mattias Ellert <mattias.ellert@fysast.uu.se> - 1.23.16-1
  - New upstream release
* Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.22.21-2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
* Fri Dec 02 2011 Mattias Ellert <mattias.ellert@fysast.uu.se> - 1.22.21-1
  - New upstream release
* Tue Nov 08 2011 Tom Callaway <spot@fedoraproject.org> - 1.21.2-2
  - rebuild for R 2.14.0
* Wed Jun 29 2011 Mattias Ellert <mattias.ellert@fysast.uu.se> - 1.21.2-1
  - New upstream release
* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.19.20-2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
* Wed Jan 19 2011 Mattias Ellert <mattias.ellert@fysast.uu.se> - 1.19.20-1
  - New upstream release
* Thu Sep 02 2010 Mattias Ellert <mattias.ellert@fysast.uu.se> - 1.18.7-1
  - New upstream release
* Fri Jun 11 2010 Mattias Ellert <mattias.ellert@fysast.uu.se> - 1.16.6-1
  - New upstream release
* Sun Nov 22 2009 Mattias Ellert <mattias.ellert@fysast.uu.se> - 1.14.2-2
  - Modify build for R 2.10 and higher - remove scriptlets
* Wed Oct 07 2009 Mattias Ellert <mattias.ellert@fysast.uu.se> - 1.14.2-1
  - New upstream release
  - Disable the check since it trips on a missing suggested package
  - Change license tag to GPLv3 to reflect an upstream license change
* Fri Jul 24 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.11-2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
* Sat May 23 2009 Mattias Ellert <mattias.ellert@fysast.uu.se> - 1.11-1
  - New upstream release
* Wed Mar 18 2009 Mattias Ellert <mattias.ellert@fysast.uu.se> - 1.10-2
  - Update package summary and description
  - Change defines to globals
* Sat Feb 28 2009 Mattias Ellert <mattias.ellert@fysast.uu.se> - 1.10-1
  - Updated to new upstream version - contains consistent licensing information
  - Reverted License tag from GPLv2 to GPLv2+ to reflect the new information
* Tue Dec 02 2008 Mattias Ellert <mattias.ellert@fysast.uu.se> - 1.09-2
  - Corrected License tag from GPLv2+ to GPLv2
* Wed Nov 05 2008 Mattias Ellert <mattias.ellert@fysast.uu.se> - 1.09-1
  - Initial package creation

Files

/usr/lib/R/library/qtl
/usr/lib/R/library/qtl/BUGS.txt
/usr/lib/R/library/qtl/CITATION
/usr/lib/R/library/qtl/DESCRIPTION
/usr/lib/R/library/qtl/INDEX
/usr/lib/R/library/qtl/INSTALL_ME.txt
/usr/lib/R/library/qtl/LICENSE.txt
/usr/lib/R/library/qtl/MQM-TODO.txt
/usr/lib/R/library/qtl/Meta
/usr/lib/R/library/qtl/Meta/Rd.rds
/usr/lib/R/library/qtl/Meta/data.rds
/usr/lib/R/library/qtl/Meta/hsearch.rds
/usr/lib/R/library/qtl/Meta/links.rds
/usr/lib/R/library/qtl/Meta/nsInfo.rds
/usr/lib/R/library/qtl/Meta/package.rds
/usr/lib/R/library/qtl/Meta/vignette.rds
/usr/lib/R/library/qtl/NAMESPACE
/usr/lib/R/library/qtl/R
/usr/lib/R/library/qtl/R/qtl
/usr/lib/R/library/qtl/R/qtl.rdb
/usr/lib/R/library/qtl/R/qtl.rdx
/usr/lib/R/library/qtl/README.txt
/usr/lib/R/library/qtl/STATUS.txt
/usr/lib/R/library/qtl/TODO.txt
/usr/lib/R/library/qtl/data
/usr/lib/R/library/qtl/data/badorder.RData
/usr/lib/R/library/qtl/data/bristle3.RData
/usr/lib/R/library/qtl/data/bristleX.RData
/usr/lib/R/library/qtl/data/fake.4way.RData
/usr/lib/R/library/qtl/data/fake.bc.RData
/usr/lib/R/library/qtl/data/fake.f2.RData
/usr/lib/R/library/qtl/data/hyper.RData
/usr/lib/R/library/qtl/data/listeria.RData
/usr/lib/R/library/qtl/data/locations.RData
/usr/lib/R/library/qtl/data/map10.RData
/usr/lib/R/library/qtl/data/mapthis.RData
/usr/lib/R/library/qtl/data/multitrait.RData
/usr/lib/R/library/qtl/doc
/usr/lib/R/library/qtl/doc/MQM-tour.R
/usr/lib/R/library/qtl/doc/Sources
/usr/lib/R/library/qtl/doc/Sources/MQM
/usr/lib/R/library/qtl/doc/Sources/MQM/MQM-tour.Rnw
/usr/lib/R/library/qtl/doc/Sources/MQM/SweaveIt.R
/usr/lib/R/library/qtl/doc/Sources/MQM/mqm
/usr/lib/R/library/qtl/doc/Sources/MQM/mqm/advantages_Rd.txt
/usr/lib/R/library/qtl/doc/Sources/MQM/mqm/advantages_latex.txt
/usr/lib/R/library/qtl/doc/Sources/MQM/mqm/description.txt
/usr/lib/R/library/qtl/doc/Sources/MQM/mqm/limitations.txt
/usr/lib/R/library/qtl/doc/Sources/MQM/mqm/parallelisation_references.txt
/usr/lib/R/library/qtl/doc/Sources/MQM/mqm/significance_references.txt
/usr/lib/R/library/qtl/doc/Sources/MQM/mqm/standard_example.txt
/usr/lib/R/library/qtl/doc/Sources/MQM/mqm/standard_references.txt
/usr/lib/R/library/qtl/doc/Sources/MQM/mqm/standard_seealso.txt
/usr/lib/R/library/qtl/doc/Sources/MQM/sweaveit.bat
/usr/lib/R/library/qtl/doc/Sources/MQM/sweaveit.sh
/usr/lib/R/library/qtl/doc/Sources/geneticmaps.Rnw
/usr/lib/R/library/qtl/doc/Sources/new_multiqtl.Rnw
/usr/lib/R/library/qtl/doc/Sources/new_summary_scanone.Rnw
/usr/lib/R/library/qtl/doc/Sources/new_summary_scantwo.Rnw
/usr/lib/R/library/qtl/doc/Sources/rqtltour.tex
/usr/lib/R/library/qtl/doc/Sources/rqtltour2.tex
/usr/lib/R/library/qtl/doc/bcsft.R
/usr/lib/R/library/qtl/doc/bcsft.Rnw
/usr/lib/R/library/qtl/doc/bcsft.pdf
/usr/lib/R/library/qtl/doc/geneticmaps.R
/usr/lib/R/library/qtl/doc/geneticmaps.pdf
/usr/lib/R/library/qtl/doc/index.html
/usr/lib/R/library/qtl/doc/new_multiqtl.R
/usr/lib/R/library/qtl/doc/new_multiqtl.pdf
/usr/lib/R/library/qtl/doc/new_summary_scanone.R
/usr/lib/R/library/qtl/doc/new_summary_scanone.pdf
/usr/lib/R/library/qtl/doc/new_summary_scantwo.R
/usr/lib/R/library/qtl/doc/new_summary_scantwo.pdf
/usr/lib/R/library/qtl/doc/rqtltour.R
/usr/lib/R/library/qtl/doc/rqtltour.pdf
/usr/lib/R/library/qtl/doc/rqtltour2.R
/usr/lib/R/library/qtl/doc/rqtltour2.pdf
/usr/lib/R/library/qtl/help
/usr/lib/R/library/qtl/help/AnIndex
/usr/lib/R/library/qtl/help/aliases.rds
/usr/lib/R/library/qtl/help/paths.rds
/usr/lib/R/library/qtl/help/qtl.rdb
/usr/lib/R/library/qtl/help/qtl.rdx
/usr/lib/R/library/qtl/html
/usr/lib/R/library/qtl/html/00Index.html
/usr/lib/R/library/qtl/html/MQM.html
/usr/lib/R/library/qtl/html/R.css
/usr/lib/R/library/qtl/html/a.starting.point.html
/usr/lib/R/library/qtl/html/add.cim.covar.html
/usr/lib/R/library/qtl/html/add.threshold.html
/usr/lib/R/library/qtl/html/addcovarint.html
/usr/lib/R/library/qtl/html/addint.html
/usr/lib/R/library/qtl/html/addloctocross.html
/usr/lib/R/library/qtl/html/addmarker.html
/usr/lib/R/library/qtl/html/addpair.html
/usr/lib/R/library/qtl/html/addqtl.html
/usr/lib/R/library/qtl/html/addtoqtl.html
/usr/lib/R/library/qtl/html/allchrsplits.html
/usr/lib/R/library/qtl/html/argmax.geno.html
/usr/lib/R/library/qtl/html/arithscan.html
/usr/lib/R/library/qtl/html/arithscanperm.html
/usr/lib/R/library/qtl/html/badorder.html
/usr/lib/R/library/qtl/html/bayesint.html
/usr/lib/R/library/qtl/html/bristle3.html
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/usr/lib/R/library/qtl/html/calc.errorlod.html
/usr/lib/R/library/qtl/html/calc.genoprob.html
/usr/lib/R/library/qtl/html/calc.penalties.html
/usr/lib/R/library/qtl/html/cbind.scanoneperm.html
/usr/lib/R/library/qtl/html/checkAlleles.html
/usr/lib/R/library/qtl/html/chrlen.html
/usr/lib/R/library/qtl/html/chrnames.html
/usr/lib/R/library/qtl/html/cim.html
/usr/lib/R/library/qtl/html/clean.cross.html
/usr/lib/R/library/qtl/html/clean.scantwo.html
/usr/lib/R/library/qtl/html/cleanGeno.html
/usr/lib/R/library/qtl/html/comparecrosses.html
/usr/lib/R/library/qtl/html/comparegeno.html
/usr/lib/R/library/qtl/html/compareorder.html
/usr/lib/R/library/qtl/html/condense.scantwo.html
/usr/lib/R/library/qtl/html/convert.map.html
/usr/lib/R/library/qtl/html/convert.scanone.html
/usr/lib/R/library/qtl/html/convert.scantwo.html
/usr/lib/R/library/qtl/html/convert2riself.html
/usr/lib/R/library/qtl/html/convert2risib.html
/usr/lib/R/library/qtl/html/convert2sa.html
/usr/lib/R/library/qtl/html/countXO.html
/usr/lib/R/library/qtl/html/drop.dupmarkers.html
/usr/lib/R/library/qtl/html/drop.markers.html
/usr/lib/R/library/qtl/html/drop.nullmarkers.html
/usr/lib/R/library/qtl/html/dropfromqtl.html
/usr/lib/R/library/qtl/html/droponemarker.html
/usr/lib/R/library/qtl/html/effectplot.html
/usr/lib/R/library/qtl/html/effectscan.html
/usr/lib/R/library/qtl/html/est.map.html
/usr/lib/R/library/qtl/html/est.rf.html
/usr/lib/R/library/qtl/html/fake.4way.html
/usr/lib/R/library/qtl/html/fake.bc.html
/usr/lib/R/library/qtl/html/fake.f2.html
/usr/lib/R/library/qtl/html/fill.geno.html
/usr/lib/R/library/qtl/html/find.flanking.html
/usr/lib/R/library/qtl/html/find.marker.html
/usr/lib/R/library/qtl/html/find.markerpos.html
/usr/lib/R/library/qtl/html/find.pheno.html
/usr/lib/R/library/qtl/html/find.pseudomarker.html
/usr/lib/R/library/qtl/html/findDupMarkers.html
/usr/lib/R/library/qtl/html/findmarkerindex.html
/usr/lib/R/library/qtl/html/fitqtl.html
/usr/lib/R/library/qtl/html/fitstahl.html
/usr/lib/R/library/qtl/html/formLinkageGroups.html
/usr/lib/R/library/qtl/html/formMarkerCovar.html
/usr/lib/R/library/qtl/html/geno.crosstab.html
/usr/lib/R/library/qtl/html/geno.image.html
/usr/lib/R/library/qtl/html/geno.table.html
/usr/lib/R/library/qtl/html/getid.html
/usr/lib/R/library/qtl/html/groupclusteredheatmap.html
/usr/lib/R/library/qtl/html/hyper.html
/usr/lib/R/library/qtl/html/inferFounderHap.html
/usr/lib/R/library/qtl/html/inferredpartitions.html
/usr/lib/R/library/qtl/html/interpPositions.html
/usr/lib/R/library/qtl/html/jittermap.html
/usr/lib/R/library/qtl/html/listeria.html
/usr/lib/R/library/qtl/html/locateXO.html
/usr/lib/R/library/qtl/html/locations.html
/usr/lib/R/library/qtl/html/lodint.html
/usr/lib/R/library/qtl/html/makeqtl.html
/usr/lib/R/library/qtl/html/map10.html
/usr/lib/R/library/qtl/html/mapthis.html
/usr/lib/R/library/qtl/html/markerlrt.html
/usr/lib/R/library/qtl/html/markernames.html
/usr/lib/R/library/qtl/html/max.scanPhyloQTL.html
/usr/lib/R/library/qtl/html/max.scanone.html
/usr/lib/R/library/qtl/html/max.scantwo.html
/usr/lib/R/library/qtl/html/movemarker.html
/usr/lib/R/library/qtl/html/mqmaugment.html
/usr/lib/R/library/qtl/html/mqmautocofactors.html
/usr/lib/R/library/qtl/html/mqmextractmarkers.html
/usr/lib/R/library/qtl/html/mqmfind.marker.html
/usr/lib/R/library/qtl/html/mqmgetmodel.html
/usr/lib/R/library/qtl/html/mqmpermutation.html
/usr/lib/R/library/qtl/html/mqmplotcircle.html
/usr/lib/R/library/qtl/html/mqmplotcistrans.html
/usr/lib/R/library/qtl/html/mqmplotclusteredheatmap.html
/usr/lib/R/library/qtl/html/mqmplotcofactors.html
/usr/lib/R/library/qtl/html/mqmplotdirectedqtl.html
/usr/lib/R/library/qtl/html/mqmplotheatmap.html
/usr/lib/R/library/qtl/html/mqmplotmultitrait.html
/usr/lib/R/library/qtl/html/mqmplotpermutations.html
/usr/lib/R/library/qtl/html/mqmplotsingletrait.html
/usr/lib/R/library/qtl/html/mqmprocesspermutation.html
/usr/lib/R/library/qtl/html/mqmscan.html
/usr/lib/R/library/qtl/html/mqmscanall.html
/usr/lib/R/library/qtl/html/mqmscanfdr.html
/usr/lib/R/library/qtl/html/mqmsetcofactors.html
/usr/lib/R/library/qtl/html/mqmtestnormal.html
/usr/lib/R/library/qtl/html/multitrait.html
/usr/lib/R/library/qtl/html/nchr.html
/usr/lib/R/library/qtl/html/nind.html
/usr/lib/R/library/qtl/html/nmar.html
/usr/lib/R/library/qtl/html/nmissing.html
/usr/lib/R/library/qtl/html/nphe.html
/usr/lib/R/library/qtl/html/nqrank.html
/usr/lib/R/library/qtl/html/nqtl.html
/usr/lib/R/library/qtl/html/ntyped.html
/usr/lib/R/library/qtl/html/nullmarkers.html
/usr/lib/R/library/qtl/html/orderMarkers.html
/usr/lib/R/library/qtl/html/phenames.html
/usr/lib/R/library/qtl/html/pickMarkerSubset.html
/usr/lib/R/library/qtl/html/plot.cross.html
/usr/lib/R/library/qtl/html/plot.errorlod.html
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/usr/lib/R/library/qtl/html/plot.scanPhyloQTL.html
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Fabrice Bellet, Tue Nov 11 09:52:24 2014