samtools-0.1.18-1.fc16 RPM for x86_64

From Fedora 16 for x86_64

SAM (Sequence Alignment/Map) is a flexible generic format for storing
nucleotide sequence alignment.
SAM Tools provide various utilities for manipulating alignments in the
SAM format, including sorting, merging, indexing and generating
alignments in a per-position format.

Provides

• samtools
• samtools(x86-64)

Requires

• /usr/bin/env
• /usr/bin/perl
• /usr/bin/python
• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.14)(64bit)
• libc.so.6(GLIBC_2.2.5)(64bit)
• libc.so.6(GLIBC_2.3)(64bit) <=
• libc.so.6(GLIBC_2.3.4)(64bit)
• libc.so.6(GLIBC_2.4)(64bit)
• libc.so.6(GLIBC_2.7)(64bit)
• libgcc_s.so.1()(64bit)
• libgcc_s.so.1(GCC_3.0)(64bit)
• libgcc_s.so.1(GCC_3.3.1)(64bit)
• libm.so.6()(64bit) <
• libm.so.6(GLIBC_2.2.5)(64bit) <=
• libncurses.so.5()(64bit) <=
• libtinfo.so.5()(64bit) >
• libz.so.1()(64bit) <=
• libz.so.1(ZLIB_1.2.2)(64bit) <=
• libz.so.1(ZLIB_1.2.3.3)(64bit) <
• perl(Carp)
• perl(Data::Dumper)
• perl(File::Spec)
• perl(Getopt::Long)
• perl(Getopt::Std) <=
• perl(List::Util)
• perl(constant) <
• perl(strict) <=
• perl(warnings) >
• rpmlib(CompressedFileNames) >= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) > 4.0-1
• rtld(GNU_HASH) >=
• rpmlib(PayloadIsXz) <= 5.2-1

License

MIT

Changelog

* Tue Sep 06 2011 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.18-1
  - Updated to 0.1.18
* Tue May 10 2011 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.16-1
  - Updated to 0.1.16
* Mon Apr 11 2011 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.15-1
  - Updated to 0.1.15
* Wed Mar 23 2011 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.14-1
  - Updated to 0.1.14
  - Build shared library instead of static
* Wed Feb 09 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.12a-3
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
* Mon Dec 06 2010 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.12a-2
  - Fixed header files directory ownership
  - Added missing header files
* Mon Dec 06 2010 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.12a-1
  - Updated to 0.1.12a
* Tue Nov 23 2010 Adam Huffman <bloch@verdurin.com> - 0.1.8-4
  - cleanup man page handling
* Sun Oct 10 2010 Adam Huffman <bloch@verdurin.com> - 0.1.8-4
  - fix attributes for devel subpackage
  - fix library location
* Sun Sep 26 2010 Adam Huffman <bloch@verdurin.com> - 0.1.8-3
  - put headers and library in standard locations
* Mon Sep 06 2010 Adam Huffman <bloch@verdurin.com> - 0.1.8-2
  - merge Rasmus' latest changes (0.1.8 update)
  - include bam.h and libbam.a for Bio-SamTools compilation
  - move bam.h and libbam.a to single directory
  - put bgzf.h, khash.h and faidx.h in the same place
  - add -fPIC to CFLAGS to make Bio-SamTools happy
  - add virtual Provide as per guidelines
* Tue Aug 17 2010 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.8-1
  - Updated to 0.1.8.
* Mon Nov 30 2009 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.7a-1
  - Updated to 0.1.7a.
* Sun Jul 26 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.5c-4
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
* Sun Jul 12 2009 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.5c-3
  - Specfile cleanup.
* Sat Jul 11 2009 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.5c-2
  - Fixed manpage location.
  - Make sure optflags is passed to the makefiles.
* Sat Jul 11 2009 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.5c-1
  - Initial build.

Files

/usr/bin/bcftools
/usr/bin/blast2sam.pl
/usr/bin/bowtie2sam.pl
/usr/bin/export2sam.pl
/usr/bin/interpolate_sam.pl
/usr/bin/maq2sam-long
/usr/bin/maq2sam-short
/usr/bin/md5fa
/usr/bin/md5sum-lite
/usr/bin/novo2sam.pl
/usr/bin/psl2sam.pl
/usr/bin/razip
/usr/bin/sam2vcf.pl
/usr/bin/samtools
/usr/bin/samtools.pl
/usr/bin/soap2sam.pl
/usr/bin/varfilter.py
/usr/bin/vcfutils.pl
/usr/bin/wgsim
/usr/bin/wgsim_eval.pl
/usr/bin/zoom2sam.pl
/usr/share/doc/samtools-0.1.18
/usr/share/doc/samtools-0.1.18/AUTHORS
/usr/share/doc/samtools-0.1.18/COPYING
/usr/share/doc/samtools-0.1.18/ChangeLog
/usr/share/doc/samtools-0.1.18/INSTALL
/usr/share/doc/samtools-0.1.18/NEWS
/usr/share/doc/samtools-0.1.18/README.bcftools
/usr/share/doc/samtools-0.1.18/bcf.tex
/usr/share/doc/samtools-0.1.18/examples
/usr/share/doc/samtools-0.1.18/examples/00README.txt
/usr/share/doc/samtools-0.1.18/examples/Makefile
/usr/share/doc/samtools-0.1.18/examples/bam2bed.c
/usr/share/doc/samtools-0.1.18/examples/calDepth.c
/usr/share/doc/samtools-0.1.18/examples/ex1.fa
/usr/share/doc/samtools-0.1.18/examples/ex1.sam.gz
/usr/share/doc/samtools-0.1.18/examples/toy.fa
/usr/share/doc/samtools-0.1.18/examples/toy.sam
/usr/share/man/man1/samtools.1.gz

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Fabrice Bellet, Mon May 13 05:39:00 2013