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fastx_toolkit-0.0.13-4.el5 RPM for ppc

From Extras Testing Packages for Enterprise Linux 5 for ppc

Name: fastx_toolkit Distribution: Fedora Project
Version: 0.0.13 Vendor: Fedora Project
Release: 4.el5 Build date: Fri May 27 12:32:37 2011
Group: Applications/Engineering Build host: ppc12.phx2.fedoraproject.org
Size: 0 Source RPM: fastx_toolkit-0.0.13-4.el5.src.rpm
Packager: Fedora Project
Url: http://hannonlab.cshl.edu/fastx_toolkit/index.html
Summary: Tools to process short-reads FASTA/FASTQ files
The FASTX-Toolkit is a collection of command line tools for
Short-Reads FASTA/FASTQ files preprocessing.

Next-Generation sequencing machines usually produce FASTA or FASTQ
files, containing multiple short-reads sequences (possibly with
quality information).

The main processing of such FASTA/FASTQ files is mapping (aka
aligning) the sequences to reference genomes or other databases using
specialized programs. Example of such mapping programs are: Blat,
SHRiMP, LastZ, MAQ and many many others.

However, It is sometimes more productive to preprocess the FASTA/FASTQ
files before mapping the sequences to the genome - manipulating the
sequences to produce better mapping results.

The FASTX-Toolkit tools perform some of these preprocessing tasks.

Provides

Requires

License

AGPLv3+

Changelog

* Fri May 27 2011 Adam Huffman <bloch@verdurin.com> - 0.0.13-4
  - fix ownership of /usr/share/fastx_toolkit
* Tue Nov 16 2010 Adam Huffman <bloch@verdurin.com> - 0.0.13-3
  - fix license and remove autotools Makefiles
* Wed Aug 25 2010 Adam Huffman <bloch@verdurin.com> - 0.0.13-2
  - fix CFLAGS and CXXFLAGS
* Tue May 11 2010 Adam Huffman <bloch@verdurin.com> - 0.0.13-1
  - initial version

Files

/usr/bin/fasta_clipping_histogram.pl
/usr/bin/fasta_formatter
/usr/bin/fasta_nucleotide_changer
/usr/bin/fastq_masker
/usr/bin/fastq_quality_boxplot_graph.sh
/usr/bin/fastq_quality_converter
/usr/bin/fastq_quality_filter
/usr/bin/fastq_quality_trimmer
/usr/bin/fastq_to_fasta
/usr/bin/fastx_artifacts_filter
/usr/bin/fastx_barcode_splitter.pl
/usr/bin/fastx_clipper
/usr/bin/fastx_collapser
/usr/bin/fastx_nucleotide_distribution_graph.sh
/usr/bin/fastx_nucleotide_distribution_line_graph.sh
/usr/bin/fastx_quality_stats
/usr/bin/fastx_renamer
/usr/bin/fastx_reverse_complement
/usr/bin/fastx_trimmer
/usr/bin/fastx_uncollapser
/usr/share/doc/fastx_toolkit-0.0.13
/usr/share/doc/fastx_toolkit-0.0.13/AUTHORS
/usr/share/doc/fastx_toolkit-0.0.13/COPYING
/usr/share/doc/fastx_toolkit-0.0.13/NEWS
/usr/share/doc/fastx_toolkit-0.0.13/README
/usr/share/doc/fastx_toolkit-0.0.13/THANKS


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Fabrice Bellet, Thu Jul 31 02:52:57 2014